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casa
$Rev:20696$
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casa
$Rev:20696$
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00001 ############################################################################# 00002 # $Id:$ 00003 # Test Name: # 00004 # Regression Test Script for the FITS-IDI import to MS # 00005 # 00006 # # 00007 # Rationale for Inclusion: # 00008 # The conversion of FITS-IDI to MS needs to be verified. # 00009 # # 00010 # Features tested: # 00011 # 1) Is the import performed without raising exceptions # 00012 # 2) Do all expected tables exist # 00013 # 3) Can the MS be opened # 00014 # 4) Do the tables contain expected values # 00015 # 5) Can several FITS-IDI files be read into one MS # 00016 # # 00017 # Input data: # 00018 # # 00019 ############################################################################# 00020 import os 00021 import sys 00022 import shutil 00023 from __main__ import default 00024 from tasks import * 00025 from taskinit import * 00026 import unittest 00027 00028 myname = 'importfitsidi-unit-test' 00029 00030 # default dataset name 00031 my_dataset_names = ['n09q2_1_1-shortened.IDI1', 00032 'n09q2_1_1-shortened-part1.IDI1', 00033 'n09q2_1_1-shortened-part2.IDI1', 00034 'emerlin_multiuv.IDI1'] 00035 00036 # name of the resulting MS 00037 msname = my_dataset_names[0]+'.ms' 00038 00039 def checktable(thename, theexpectation): 00040 global msname, myname 00041 tb.open(msname+"/"+thename) 00042 if thename == "": 00043 thename = "MAIN" 00044 for mycell in theexpectation: 00045 print myname, ": comparing ", mycell 00046 value = tb.getcell(mycell[0], mycell[1]) 00047 # see if value is array 00048 try: 00049 isarray = value.__len__ 00050 except: 00051 # it's not an array 00052 # zero tolerance? 00053 if mycell[3] == 0: 00054 in_agreement = (value == mycell[2]) 00055 else: 00056 in_agreement = ( abs(value - mycell[2]) < mycell[3]) 00057 else: 00058 if isinstance(value, basestring): 00059 in_agreement = value == mycell[2] 00060 else: 00061 # it's an array 00062 # zero tolerance? 00063 if mycell[3] == 0: 00064 in_agreement = (value == mycell[2]).all() 00065 else: 00066 try: 00067 in_agreement = (abs(value - mycell[2]) < mycell[3]).all() 00068 except: 00069 in_agreement = False 00070 if not in_agreement: 00071 print myname, ": Error in MS subtable", thename, ":" 00072 print " column ", mycell[0], " row ", mycell[1], " contains ", value 00073 print " expected value is ", mycell[2] 00074 tb.close() 00075 return False 00076 tb.close() 00077 print myname, ": table ", thename, " as expected." 00078 return True 00079 00080 00081 ########################### 00082 # beginning of actual test 00083 00084 class test_importfitsidi(unittest.TestCase): 00085 00086 def setUp(self): 00087 res = None 00088 00089 datapath=os.environ.get('CASAPATH').split()[0]+'/data/regression/fitsidi_import/input/' 00090 for fname in my_dataset_names: 00091 if(os.path.exists(fname)): 00092 os.remove(fname) 00093 shutil.copy(datapath + fname, fname) 00094 default(importfitsidi) 00095 00096 def tearDown(self): 00097 for fname in my_dataset_names: 00098 os.remove(fname) 00099 shutil.rmtree(msname,ignore_errors=True) 00100 shutil.rmtree(msname+'.flagversions',ignore_errors=True) 00101 00102 def test1(self): 00103 '''fitsidi-import: Test good input''' 00104 retValue = {'success': True, 'msgs': "", 'error_msgs': '' } 00105 00106 self.res = importfitsidi(my_dataset_names[0], msname) 00107 print myname, ": Success! Now checking output ..." 00108 mscomponents = set(["table.dat", 00109 # "table.f0", 00110 "table.f1", 00111 "table.f2", 00112 "table.f3", 00113 "table.f4", 00114 "table.f5", 00115 "table.f6", 00116 "table.f7", 00117 "table.f8", 00118 "ANTENNA/table.dat", 00119 "DATA_DESCRIPTION/table.dat", 00120 "FEED/table.dat", 00121 "FIELD/table.dat", 00122 "FLAG_CMD/table.dat", 00123 "HISTORY/table.dat", 00124 "OBSERVATION/table.dat", 00125 "POINTING/table.dat", 00126 "POLARIZATION/table.dat", 00127 "PROCESSOR/table.dat", 00128 "SOURCE/table.dat", 00129 "SPECTRAL_WINDOW/table.dat", 00130 "STATE/table.dat", 00131 "ANTENNA/table.f0", 00132 "DATA_DESCRIPTION/table.f0", 00133 "FEED/table.f0", 00134 "FIELD/table.f0", 00135 "FLAG_CMD/table.f0", 00136 "HISTORY/table.f0", 00137 "OBSERVATION/table.f0", 00138 "POINTING/table.f0", 00139 "POLARIZATION/table.f0", 00140 "PROCESSOR/table.f0", 00141 "SOURCE/table.f0", 00142 "SPECTRAL_WINDOW/table.f0", 00143 "STATE/table.f0" 00144 ]) 00145 for name in mscomponents: 00146 if not os.access(msname+"/"+name, os.F_OK): 00147 print myname, ": Error ", msname+"/"+name, "doesn't exist ..." 00148 retValue['success']=False 00149 retValue['error_msgs']=retValue['error_msgs']+msname+'/'+name+' does not exist' 00150 else: 00151 print myname, ": ", name, "present." 00152 print myname, ": MS exists. All tables present. Try opening as MS ..." 00153 try: 00154 ms.open(msname) 00155 except: 00156 print myname, ": Error Cannot open MS table", tablename 00157 retValue['success']=False 00158 retValue['error_msgs']=retValue['error_msgs']+'Cannot open MS table '+tablename 00159 else: 00160 ms.close() 00161 print myname, ": OK. Checking tables in detail ..." 00162 retValue['success']=True 00163 00164 # check main table first 00165 name = "" 00166 # col name, row number, expected value, tolerance 00167 expected = [ 00168 ['UVW', 42, [ 0., 0., 0. ], 1E-8], 00169 ['EXPOSURE', 42, 2.0, 1E-8], 00170 ['DATA', 42,[[ 1.06945515 +7.91624188e-09j, 00171 0.98315531 +9.31322575e-10j, 00172 1.05244470 +5.77396486e-09j, 00173 0.90496856 -0.00000000e+00j, 00174 0.93005872 -6.71682887e-09j, 00175 0.80769897 -0.00000000e+00j, 00176 0.93059886 -6.97121116e-09j, 00177 0.77081358 -0.00000000e+00j, 00178 0.93020338 -7.45058060e-09j, 00179 0.83353537 -0.00000000e+00j, 00180 0.91982168 -5.54113422e-09j, 00181 0.88411278 -4.65661287e-10j, 00182 1.02857709 +5.78550630e-09j, 00183 0.93398595 -0.00000000e+00j, 00184 1.13884020 +1.01289768e-08j, 00185 2.49237108 -0.00000000e+00j ]], 1E-8] 00186 ] 00187 results = checktable(name, expected) 00188 if not results: 00189 retValue['success']=False 00190 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00191 00192 expected = [ 00193 ['UVW', 638, [171529.37575288, -786712.70341456, 210321.20978818], 1E-8], 00194 ['EXPOSURE', 638, 2.0, 1E-8], 00195 ['DATA', 638, [[-0.00224198+0.00067056j, 00196 -0.00475123+0.0024323j, 00197 -0.00416393+0.00212671j, 00198 -0.00565350+0.00340364j, 00199 -0.00527357+0.00011977j, 00200 -0.00292699+0.00131954j, 00201 -0.00429945+0.00035823j, 00202 -0.00545671-0.00033945j, 00203 -0.00646004+0.00037293j, 00204 -0.00419376-0.00115011j, 00205 -0.00508117+0.00045939j, 00206 -0.00501660-0.00047975j, 00207 -0.00444734-0.00101535j, 00208 -0.00384988-0.00102731j, 00209 -0.00551326+0.00101364j, 00210 -0.00337701+0.00080481j]], 1E-8] 00211 ] 00212 results = checktable(name, expected) 00213 if not results: 00214 retValue['success']=False 00215 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00216 00217 name = "ANTENNA" 00218 expected = [ ['OFFSET', 1, [ 0., 0., 0.], 0], 00219 ['POSITION', 1, [ 3370605.8469, 711917.6732, 5349830.8438], 0.0001], 00220 ['DISH_DIAMETER',1, 0.0, 0.0] # the EVN default value 00221 ] 00222 results = checktable(name, expected) 00223 if not results: 00224 retValue['success']=False 00225 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00226 00227 name = "SPECTRAL_WINDOW" 00228 expected = [ ['NUM_CHAN', 7, 16, 0], 00229 ['TOTAL_BANDWIDTH', 7, 8E6, 0], 00230 ['CHAN_WIDTH', 7, [ 500000., 500000., 500000., 500000., 500000., 500000., 00231 500000., 500000., 500000., 500000., 500000., 500000., 00232 500000., 500000., 500000., 500000.], 1E-8], 00233 ['CHAN_FREQ', 7, [ 4.32184900e+10, 4.32189900e+10, 4.32194900e+10, 4.32199900e+10, 00234 4.32204900e+10, 4.32209900e+10, 4.32214900e+10, 4.32219900e+10, 00235 4.32224900e+10, 4.32229900e+10, 4.32234900e+10, 4.32239900e+10, 00236 4.32244900e+10, 4.32249900e+10, 4.32254900e+10, 4.32259900e+10], 1E-8] 00237 ] 00238 results = checktable(name, expected) 00239 if not results: 00240 retValue['success']=False 00241 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00242 00243 self.assertTrue(retValue['success']) 00244 00245 def test2(self): 00246 '''fitsidi-import: Test good input, list of two input files''' 00247 retValue = {'success': True, 'msgs': "", 'error_msgs': '' } 00248 00249 self.res = importfitsidi([my_dataset_names[1],my_dataset_names[2]], msname) 00250 print myname, ": Success! Now checking output ..." 00251 mscomponents = set(["table.dat", 00252 # "table.f0", 00253 "table.f1", 00254 "table.f2", 00255 "table.f3", 00256 "table.f4", 00257 "table.f5", 00258 "table.f6", 00259 "table.f7", 00260 "table.f8", 00261 "ANTENNA/table.dat", 00262 "DATA_DESCRIPTION/table.dat", 00263 "FEED/table.dat", 00264 "FIELD/table.dat", 00265 "FLAG_CMD/table.dat", 00266 "HISTORY/table.dat", 00267 "OBSERVATION/table.dat", 00268 "POINTING/table.dat", 00269 "POLARIZATION/table.dat", 00270 "PROCESSOR/table.dat", 00271 "SOURCE/table.dat", 00272 "SPECTRAL_WINDOW/table.dat", 00273 "STATE/table.dat", 00274 "ANTENNA/table.f0", 00275 "DATA_DESCRIPTION/table.f0", 00276 "FEED/table.f0", 00277 "FIELD/table.f0", 00278 "FLAG_CMD/table.f0", 00279 "HISTORY/table.f0", 00280 "OBSERVATION/table.f0", 00281 "POINTING/table.f0", 00282 "POLARIZATION/table.f0", 00283 "PROCESSOR/table.f0", 00284 "SOURCE/table.f0", 00285 "SPECTRAL_WINDOW/table.f0", 00286 "STATE/table.f0" 00287 ]) 00288 for name in mscomponents: 00289 if not os.access(msname+"/"+name, os.F_OK): 00290 print myname, ": Error ", msname+"/"+name, "doesn't exist ..." 00291 retValue['success']=False 00292 retValue['error_msgs']=retValue['error_msgs']+msname+'/'+name+' does not exist' 00293 else: 00294 print myname, ": ", name, "present." 00295 print myname, ": MS exists. All tables present. Try opening as MS ..." 00296 try: 00297 ms.open(msname) 00298 except: 00299 print myname, ": Error Cannot open MS table", tablename 00300 retValue['success']=False 00301 retValue['error_msgs']=retValue['error_msgs']+'Cannot open MS table '+tablename 00302 else: 00303 ms.close() 00304 print myname, ": OK. Checking tables in detail ..." 00305 retValue['success']=True 00306 00307 # check main table first 00308 name = "" 00309 # col name, row number, expected value, tolerance 00310 expected = [ 00311 ['UVW', 42, [ 0., 0., 0. ], 1E-8], 00312 ['EXPOSURE', 42, 2.0, 1E-8], 00313 ['DATA', 42,[[ 1.06945515 +7.91624188e-09j, 00314 0.98315531 +9.31322575e-10j, 00315 1.05244470 +5.77396486e-09j, 00316 0.90496856 -0.00000000e+00j, 00317 0.93005872 -6.71682887e-09j, 00318 0.80769897 -0.00000000e+00j, 00319 0.93059886 -6.97121116e-09j, 00320 0.77081358 -0.00000000e+00j, 00321 0.93020338 -7.45058060e-09j, 00322 0.83353537 -0.00000000e+00j, 00323 0.91982168 -5.54113422e-09j, 00324 0.88411278 -4.65661287e-10j, 00325 1.02857709 +5.78550630e-09j, 00326 0.93398595 -0.00000000e+00j, 00327 1.13884020 +1.01289768e-08j, 00328 2.49237108 -0.00000000e+00j ]], 1E-8] 00329 ] 00330 results = checktable(name, expected) 00331 if not results: 00332 retValue['success']=False 00333 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00334 00335 expected = [ 00336 ['UVW', 638, [171529.37575288, -786712.70341456, 210321.20978818], 1E-8], 00337 ['EXPOSURE', 638, 2.0, 1E-8], 00338 ['DATA', 638, [[-0.00224198+0.00067056j, 00339 -0.00475123+0.0024323j, 00340 -0.00416393+0.00212671j, 00341 -0.00565350+0.00340364j, 00342 -0.00527357+0.00011977j, 00343 -0.00292699+0.00131954j, 00344 -0.00429945+0.00035823j, 00345 -0.00545671-0.00033945j, 00346 -0.00646004+0.00037293j, 00347 -0.00419376-0.00115011j, 00348 -0.00508117+0.00045939j, 00349 -0.00501660-0.00047975j, 00350 -0.00444734-0.00101535j, 00351 -0.00384988-0.00102731j, 00352 -0.00551326+0.00101364j, 00353 -0.00337701+0.00080481j]], 1E-8] 00354 ] 00355 results = checktable(name, expected) 00356 if not results: 00357 retValue['success']=False 00358 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00359 00360 name = "ANTENNA" 00361 expected = [ ['OFFSET', 1, [ 0., 0., 0.], 0], 00362 ['POSITION', 1, [ 3370605.8469, 711917.6732, 5349830.8438], 0.0001], 00363 ['DISH_DIAMETER',1, 0.0, 0.0] # the EVN default value 00364 ] 00365 results = checktable(name, expected) 00366 if not results: 00367 retValue['success']=False 00368 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00369 00370 name = "SPECTRAL_WINDOW" 00371 expected = [ ['NUM_CHAN', 7, 16, 0], 00372 ['TOTAL_BANDWIDTH', 7, 8E6, 0], 00373 ['CHAN_WIDTH', 7, [ 500000., 500000., 500000., 500000., 500000., 500000., 00374 500000., 500000., 500000., 500000., 500000., 500000., 00375 500000., 500000., 500000., 500000.], 1E-8], 00376 ['CHAN_FREQ', 7, [ 4.32184900e+10, 4.32189900e+10, 4.32194900e+10, 4.32199900e+10, 00377 4.32204900e+10, 4.32209900e+10, 4.32214900e+10, 4.32219900e+10, 00378 4.32224900e+10, 4.32229900e+10, 4.32234900e+10, 4.32239900e+10, 00379 4.32244900e+10, 4.32249900e+10, 4.32254900e+10, 4.32259900e+10], 1E-8] 00380 ] 00381 results = checktable(name, expected) 00382 if not results: 00383 retValue['success']=False 00384 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00385 00386 self.assertTrue(retValue['success']) 00387 00388 def test3(self): 00389 '''fitsidi-import: Test antenna name and multi uvtable''' 00390 retValue = {'success': True, 'msgs': "", 'error_msgs': '' } 00391 00392 self.res = importfitsidi(my_dataset_names[3], msname) 00393 print myname, ": Success! Now checking output ..." 00394 mscomponents = set(["table.dat", 00395 # "table.f0", 00396 "table.f1", 00397 "table.f2", 00398 "table.f3", 00399 "table.f4", 00400 "table.f5", 00401 "table.f6", 00402 "table.f7", 00403 "table.f8", 00404 "ANTENNA/table.dat", 00405 "DATA_DESCRIPTION/table.dat", 00406 "FEED/table.dat", 00407 "FIELD/table.dat", 00408 "FLAG_CMD/table.dat", 00409 "HISTORY/table.dat", 00410 "OBSERVATION/table.dat", 00411 "POINTING/table.dat", 00412 "POLARIZATION/table.dat", 00413 "PROCESSOR/table.dat", 00414 "SOURCE/table.dat", 00415 "SPECTRAL_WINDOW/table.dat", 00416 "STATE/table.dat", 00417 "ANTENNA/table.f0", 00418 "DATA_DESCRIPTION/table.f0", 00419 "FEED/table.f0", 00420 "FIELD/table.f0", 00421 "FLAG_CMD/table.f0", 00422 "HISTORY/table.f0", 00423 "OBSERVATION/table.f0", 00424 "POINTING/table.f0", 00425 "POLARIZATION/table.f0", 00426 "PROCESSOR/table.f0", 00427 "SOURCE/table.f0", 00428 "SPECTRAL_WINDOW/table.f0", 00429 "STATE/table.f0" 00430 ]) 00431 for name in mscomponents: 00432 if not os.access(msname+"/"+name, os.F_OK): 00433 print myname, ": Error ", msname+"/"+name, "doesn't exist ..." 00434 retValue['success']=False 00435 retValue['error_msgs']=retValue['error_msgs']+msname+'/'+name+' does not exist' 00436 else: 00437 print myname, ": ", name, "present." 00438 print myname, ": MS exists. All tables present. Try opening as MS ..." 00439 try: 00440 ms.open(msname) 00441 except: 00442 print myname, ": Error Cannot open MS table", tablename 00443 retValue['success']=False 00444 retValue['error_msgs']=retValue['error_msgs']+'Cannot open MS table '+tablename 00445 else: 00446 ms.close() 00447 print myname, ": OK. Checking tables in detail ..." 00448 retValue['success']=True 00449 00450 # check main table first 00451 name = "" 00452 00453 # col name, row number, expected value, tolerance 00454 # this is the first row of the second uv table 00455 expected = [ 00456 ['UVW', 253, [ 209524.112917,-52443.4688607,-25501.833085 ], 1E-6], 00457 ['EXPOSURE', 253, 1.0, 1E-8], 00458 ['WEIGHT', 253, 1.0, 1E-8] 00459 ] 00460 results = checktable(name, expected) 00461 if not results: 00462 retValue['success']=False 00463 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00464 00465 00466 name = "ANTENNA" 00467 expected = [ ['OFFSET', 1, [ 0., 0., 0.], 0], 00468 ['POSITION', 1, [ 3859711.503, -201995.077, 5056134.251], 0.001], 00469 ['DISH_DIAMETER',1, 15.0, 0.001], 00470 ['NAME', 1, 'Kn', 0] 00471 ] 00472 results = checktable(name, expected) 00473 if not results: 00474 retValue['success']=False 00475 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00476 00477 name = "SPECTRAL_WINDOW" 00478 expected = [ ['NUM_CHAN', 3, 512, 0], 00479 ['TOTAL_BANDWIDTH', 3, 128e+6, 0], 00480 ['CHAN_WIDTH', 3, [250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00481 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00482 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00483 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00484 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00485 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00486 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00487 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00488 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00489 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00490 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00491 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00492 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00493 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00494 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00495 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00496 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00497 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00498 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00499 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00500 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00501 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00502 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00503 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00504 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00505 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00506 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00507 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00508 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00509 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00510 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00511 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00512 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00513 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00514 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00515 250000., 250000., 250000., 250000., 250000., 250000., 250000., 250000., 00516 250000., 250000., 250000., 250000., 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5.99700000e+09, 5.99725000e+09, 5.99750000e+09, 5.99775000e+09, 00670 5.99800000e+09, 5.99825000e+09, 5.99850000e+09, 5.99875000e+09, 00671 5.99900000e+09, 5.99925000e+09, 5.99950000e+09, 5.99975000e+09,], 1E-8] 00672 ] 00673 results = checktable(name, expected) 00674 if not results: 00675 retValue['success']=False 00676 retValue['error_msgs']=retValue['error_msgs']+'Check of table '+name+' failed' 00677 00678 self.assertTrue(retValue['success']) 00679 00680 00681 00682 def suite(): 00683 return [test_importfitsidi]
1.8.0
