LCOV - code coverage report
Current view: top level - alma/ASDM - PulsarTable.cc (source / functions) Hit Total Coverage
Test: casa_coverage.info Lines: 19 394 4.8 %
Date: 2023-10-25 08:47:59 Functions: 5 37 13.5 %

          Line data    Source code
       1             : 
       2             : /*
       3             :  * ALMA - Atacama Large Millimeter Array
       4             :  * (c) European Southern Observatory, 2002
       5             :  * (c) Associated Universities Inc., 2002
       6             :  * Copyright by ESO (in the framework of the ALMA collaboration),
       7             :  * Copyright by AUI (in the framework of the ALMA collaboration),
       8             :  * All rights reserved.
       9             :  * 
      10             :  * This library is free software; you can redistribute it and/or
      11             :  * modify it under the terms of the GNU Lesser General Public
      12             :  * License as published by the Free software Foundation; either
      13             :  * version 2.1 of the License, or (at your option) any later version.
      14             :  * 
      15             :  * This library is distributed in the hope that it will be useful,
      16             :  * but WITHOUT ANY WARRANTY, without even the implied warranty of
      17             :  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
      18             :  * Lesser General Public License for more details.
      19             :  * 
      20             :  * You should have received a copy of the GNU Lesser General Public
      21             :  * License along with this library; if not, write to the Free Software
      22             :  * Foundation, Inc., 59 Temple Place, Suite 330, Boston,
      23             :  * MA 02111-1307  USA
      24             :  *
      25             :  * Warning!
      26             :  *  -------------------------------------------------------------------- 
      27             :  * | This is generated code!  Do not modify this file.                  |
      28             :  * | If you do, all changes will be lost when the file is re-generated. |
      29             :  *  --------------------------------------------------------------------
      30             :  *
      31             :  * File PulsarTable.cpp
      32             :  */
      33             : #include <alma/ASDM/ConversionException.h>
      34             : #include <alma/ASDM/DuplicateKey.h>
      35             : #include <alma/ASDM/OutOfBoundsException.h>
      36             : 
      37             : using asdm::ConversionException;
      38             : using asdm::DuplicateKey;
      39             : using asdm::OutOfBoundsException;
      40             : 
      41             : #include <alma/ASDM/ASDM.h>
      42             : #include <alma/ASDM/PulsarTable.h>
      43             : #include <alma/ASDM/PulsarRow.h>
      44             : #include <alma/ASDM/Parser.h>
      45             : 
      46             : using asdm::ASDM;
      47             : using asdm::PulsarTable;
      48             : using asdm::PulsarRow;
      49             : using asdm::Parser;
      50             : 
      51             : #include <iostream>
      52             : #include <fstream>
      53             : #include <iterator>
      54             : #include <sstream>
      55             : #include <set>
      56             : #include <algorithm>
      57             : using namespace std;
      58             : 
      59             : #include <alma/ASDM/Misc.h>
      60             : using namespace asdm;
      61             : 
      62             : #include <libxml/parser.h>
      63             : #include <libxml/tree.h>
      64             : 
      65             : #ifndef WITHOUT_BOOST
      66             : #include "boost/filesystem/operations.hpp"
      67             : #include <boost/algorithm/string.hpp>
      68             : #else
      69             : #include <sys/stat.h>
      70             : #endif
      71             : 
      72             : namespace asdm {
      73             :         // The name of the entity we will store in this table.
      74             :         static string entityNameOfPulsar = "Pulsar";
      75             :         
      76             :         // An array of string containing the names of the columns of this table.
      77             :         // The array is filled in the order : key, required value, optional value.
      78             :         //
      79             :         static string attributesNamesOfPulsar_a[] = {
      80             :                 
      81             :                         "pulsarId"
      82             :                 
      83             :                 
      84             :                         , "refTime"
      85             :                 
      86             :                         , "refPulseFreq"
      87             :                 
      88             :                         , "refPhase"
      89             :                 
      90             :                         , "numBin"
      91             :                                 
      92             :                 
      93             :                         , "numPoly"
      94             :                 
      95             :                         , "phasePoly"
      96             :                 
      97             :                         , "timeSpan"
      98             :                 
      99             :                         , "startPhaseBin"
     100             :                 
     101             :                         , "endPhaseBin"
     102             :                 
     103             :                         , "dispersionMeasure"
     104             :                 
     105             :                         , "refFrequency"
     106             :                                 
     107             :         };
     108             :         
     109             :         // A vector of string whose content is a copy of the strings in the array above.
     110             :         //
     111             :         static vector<string> attributesNamesOfPulsar_v (attributesNamesOfPulsar_a, attributesNamesOfPulsar_a + sizeof(attributesNamesOfPulsar_a) / sizeof(attributesNamesOfPulsar_a[0]));
     112             : 
     113             :         // An array of string containing the names of the columns of this table.
     114             :         // The array is filled in the order where the names would be read by default in the XML header of a file containing
     115             :         // the table exported in binary mode.
     116             :         //      
     117             :         static string attributesNamesInBinOfPulsar_a[] = {
     118             :     
     119             :          "pulsarId" , "refTime" , "refPulseFreq" , "refPhase" , "numBin" 
     120             :         ,
     121             :          "numPoly" , "phasePoly" , "timeSpan" , "startPhaseBin" , "endPhaseBin" , "dispersionMeasure" , "refFrequency" 
     122             :     
     123             :         };
     124             :                                         
     125             :         // A vector of string whose content is a copy of the strings in the array above.
     126             :         //
     127             :         static vector<string> attributesNamesInBinOfPulsar_v(attributesNamesInBinOfPulsar_a, attributesNamesInBinOfPulsar_a + sizeof(attributesNamesInBinOfPulsar_a) / sizeof(attributesNamesInBinOfPulsar_a[0]));                
     128             :         
     129             : 
     130             :         // The array of attributes (or column) names that make up key key.
     131             :         //
     132             :         string keyOfPulsar_a[] = {
     133             :         
     134             :                 "pulsarId"
     135             :                  
     136             :         };
     137             :          
     138             :         // A vector of strings which are copies of those stored in the array above.
     139             :         vector<string> keyOfPulsar_v(keyOfPulsar_a, keyOfPulsar_a + sizeof(keyOfPulsar_a) / sizeof(keyOfPulsar_a[0]));
     140             : 
     141             :         /**
     142             :          * Return the list of field names that make up key key
     143             :          * as a const reference to a vector of strings.
     144             :          */     
     145           0 :         const vector<string>& PulsarTable::getKeyName() {
     146           0 :                 return keyOfPulsar_v;
     147             :         }
     148             : 
     149             : 
     150         110 :         PulsarTable::PulsarTable(ASDM &c) : container(c) {
     151             : 
     152             :                 // Define a default entity.
     153         110 :                 entity.setEntityId(EntityId("uid://X0/X0/X0"));
     154         110 :                 entity.setEntityIdEncrypted("na");
     155         110 :                 entity.setEntityTypeName("PulsarTable");
     156         110 :                 entity.setEntityVersion("1");
     157         110 :                 entity.setInstanceVersion("1");
     158             :                 
     159             :                 // Archive XML
     160         110 :                 archiveAsBin = false;
     161             :                 
     162             :                 // File XML
     163         110 :                 fileAsBin = false;
     164             :                 
     165             :                 // By default the table is considered as present in memory
     166         110 :                 presentInMemory = true;
     167             :                 
     168             :                 // By default there is no load in progress
     169         110 :                 loadInProgress = false;
     170         110 :         }
     171             :         
     172             : /**
     173             :  * A destructor for PulsarTable.
     174             :  */
     175         220 :         PulsarTable::~PulsarTable() {
     176         110 :                 for (unsigned int i = 0; i < privateRows.size(); i++) 
     177           0 :                         delete(privateRows.at(i));
     178         220 :         }
     179             : 
     180             :         /**
     181             :          * Container to which this table belongs.
     182             :          */
     183           0 :         ASDM &PulsarTable::getContainer() const {
     184           0 :                 return container;
     185             :         }
     186             : 
     187             :         /**
     188             :          * Return the number of rows in the table.
     189             :          */
     190          39 :         unsigned int PulsarTable::size() const {
     191          39 :                 if (presentInMemory) 
     192          39 :                         return privateRows.size();
     193             :                 else
     194           0 :                         return declaredSize;
     195             :         }
     196             :         
     197             :         /**
     198             :          * Return the name of this table.
     199             :          */
     200        1332 :         string PulsarTable::getName() const {
     201        1332 :                 return entityNameOfPulsar;
     202             :         }
     203             :         
     204             :         /**
     205             :          * Return the name of this table.
     206             :          */
     207           0 :         string PulsarTable::name() {
     208           0 :                 return entityNameOfPulsar;
     209             :         }
     210             :         
     211             :         /**
     212             :          * Return the the names of the attributes (or columns) of this table.
     213             :          */
     214           0 :         const vector<string>& PulsarTable::getAttributesNames() { return attributesNamesOfPulsar_v; }
     215             :         
     216             :         /**
     217             :          * Return the the names of the attributes (or columns) of this table as they appear by default
     218             :          * in an binary export of this table.
     219             :          */
     220           0 :         const vector<string>& PulsarTable::defaultAttributesNamesInBin() { return attributesNamesInBinOfPulsar_v; }
     221             : 
     222             :         /**
     223             :          * Return this table's Entity.
     224             :          */
     225           0 :         Entity PulsarTable::getEntity() const {
     226           0 :                 return entity;
     227             :         }
     228             : 
     229             :         /**
     230             :          * Set this table's Entity.
     231             :          */
     232           0 :         void PulsarTable::setEntity(Entity e) {
     233           0 :                 this->entity = e; 
     234           0 :         }
     235             :         
     236             :         //
     237             :         // ====> Row creation.
     238             :         //
     239             :         
     240             :         /**
     241             :          * Create a new row.
     242             :          */
     243           0 :         PulsarRow *PulsarTable::newRow() {
     244           0 :                 return new PulsarRow (*this);
     245             :         }
     246             :         
     247             : 
     248             :         /**
     249             :          * Create a new row initialized to the specified values.
     250             :          * @return a pointer on the created and initialized row.
     251             :         
     252             :          * @param refTime 
     253             :         
     254             :          * @param refPulseFreq 
     255             :         
     256             :          * @param refPhase 
     257             :         
     258             :          * @param numBin 
     259             :         
     260             :      */
     261           0 :         PulsarRow* PulsarTable::newRow(ArrayTime refTime, Frequency refPulseFreq, double refPhase, int numBin){
     262           0 :                 PulsarRow *row = new PulsarRow(*this);
     263             :                         
     264           0 :                 row->setRefTime(refTime);
     265             :                         
     266           0 :                 row->setRefPulseFreq(refPulseFreq);
     267             :                         
     268           0 :                 row->setRefPhase(refPhase);
     269             :                         
     270           0 :                 row->setNumBin(numBin);
     271             :         
     272           0 :                 return row;             
     273             :         }       
     274             :         
     275             : 
     276             : 
     277           0 : PulsarRow* PulsarTable::newRow(PulsarRow* row) {
     278           0 :         return new PulsarRow(*this, row);
     279             : }
     280             : 
     281             :         //
     282             :         // Append a row to its table.
     283             :         //
     284             : 
     285             :         
     286             :          
     287             :         
     288             :         /** 
     289             :          * Look up the table for a row whose noautoincrementable attributes are matching their
     290             :          * homologues in *x.  If a row is found  this row else autoincrement  *x.pulsarId, 
     291             :          * add x to its table and returns x.
     292             :          *  
     293             :          * @returns a pointer on a PulsarRow.
     294             :          * @param x. A pointer on the row to be added.
     295             :          */ 
     296             :                 
     297             :                         
     298           0 :         PulsarRow* PulsarTable::add(PulsarRow* x) {
     299             :                          
     300           0 :                 PulsarRow* aRow = lookup(
     301             :                                 
     302           0 :                 x->getRefTime()
     303             :                                 ,
     304           0 :                 x->getRefPulseFreq()
     305             :                                 ,
     306             :                 x->getRefPhase()
     307             :                                 ,
     308             :                 x->getNumBin()
     309             :                                 
     310             :                 );
     311           0 :                 if (aRow) return aRow;
     312             :                         
     313             : 
     314             :                         
     315             :                 // Autoincrement pulsarId
     316           0 :                 x->setPulsarId(Tag(size(), TagType::Pulsar));
     317             :                                                 
     318           0 :                 row.push_back(x);
     319           0 :                 privateRows.push_back(x);
     320           0 :                 x->isAdded(true);
     321           0 :                 return x;
     322             :         }
     323             :                 
     324             :         
     325             :                 
     326           0 :         void PulsarTable::addWithoutCheckingUnique(PulsarRow * x) {
     327           0 :                 if (getRowByKey(
     328           0 :                                                 x->getPulsarId()
     329           0 :                                                 ) != (PulsarRow *) 0) 
     330           0 :                         throw DuplicateKey("Dupicate key exception in ", "PulsarTable");
     331           0 :                 row.push_back(x);
     332           0 :                 privateRows.push_back(x);
     333           0 :                 x->isAdded(true);
     334           0 :         }
     335             : 
     336             : 
     337             : 
     338             : 
     339             :         // 
     340             :         // A private method to append a row to its table, used by input conversion
     341             :         // methods, with row uniqueness.
     342             :         //
     343             : 
     344             :         
     345             :         /**
     346             :          * If this table has an autoincrementable attribute then check if *x verifies the rule of uniqueness and throw exception if not.
     347             :          * Check if *x verifies the key uniqueness rule and throw an exception if not.
     348             :          * Append x to its table.
     349             :          * @param x a pointer on the row to be appended.
     350             :          * @returns a pointer on x.
     351             :          * @throws DuplicateKey
     352             :          
     353             :          * @throws UniquenessViolationException
     354             :          
     355             :          */
     356           0 :         PulsarRow*  PulsarTable::checkAndAdd(PulsarRow* x, bool skipCheckUniqueness)  {
     357           0 :                 if (!skipCheckUniqueness) { 
     358             :          
     359             :                  
     360           0 :                         if (lookup(
     361             :                         
     362           0 :                                 x->getRefTime()
     363             :                 ,
     364           0 :                                 x->getRefPulseFreq()
     365             :                 ,
     366             :                                 x->getRefPhase()
     367             :                 ,
     368             :                                 x->getNumBin()
     369             :                 
     370           0 :                         )) throw UniquenessViolationException();
     371             :                 
     372             :                 
     373             :                 }
     374             :                 
     375           0 :                 if (getRowByKey(
     376             :         
     377           0 :                         x->getPulsarId()
     378             :                         
     379           0 :                 )) throw DuplicateKey("Duplicate key exception in ", "PulsarTable");
     380             :                 
     381           0 :                 row.push_back(x);
     382           0 :                 privateRows.push_back(x);
     383           0 :                 x->isAdded(true);
     384           0 :                 return x;       
     385             :         }       
     386             : 
     387             : 
     388             : 
     389             :         //
     390             :         // A private method to brutally append a row to its table, without checking for row uniqueness.
     391             :         //
     392             : 
     393           0 :         void PulsarTable::append(PulsarRow *x) {
     394           0 :                 privateRows.push_back(x);
     395           0 :                 x->isAdded(true);
     396           0 :         }
     397             : 
     398             : 
     399             : 
     400             : 
     401             : 
     402           0 :          vector<PulsarRow *> PulsarTable::get() {
     403           0 :                 checkPresenceInMemory();
     404           0 :             return privateRows;
     405             :          }
     406             :          
     407           0 :          const vector<PulsarRow *>& PulsarTable::get() const {
     408           0 :                 const_cast<PulsarTable&>(*this).checkPresenceInMemory();      
     409           0 :             return privateRows;
     410             :          }       
     411             :                 
     412             : 
     413             : 
     414             : 
     415             : 
     416             :         
     417             : 
     418             :         
     419             : /*
     420             :  ** Returns a PulsarRow* given a key.
     421             :  ** @return a pointer to the row having the key whose values are passed as parameters, or 0 if
     422             :  ** no row exists for that key.
     423             :  **
     424             :  */
     425           0 :         PulsarRow* PulsarTable::getRowByKey(Tag pulsarId)  {
     426           0 :         checkPresenceInMemory();
     427           0 :         PulsarRow* aRow = 0;
     428           0 :         for (unsigned int i = 0; i < privateRows.size(); i++) {
     429           0 :                 aRow = row.at(i);
     430             :                 
     431             :                         
     432           0 :                                 if (aRow->pulsarId != pulsarId) continue;
     433             :                         
     434             :                 
     435           0 :                 return aRow;
     436             :         }
     437           0 :         return 0;               
     438             : }
     439             :         
     440             : 
     441             :         
     442             : /**
     443             :  * Look up the table for a row whose all attributes  except the autoincrementable one 
     444             :  * are equal to the corresponding parameters of the method.
     445             :  * @return a pointer on this row if any, 0 otherwise.
     446             :  *
     447             :                         
     448             :  * @param refTime.
     449             :                         
     450             :  * @param refPulseFreq.
     451             :                         
     452             :  * @param refPhase.
     453             :                         
     454             :  * @param numBin.
     455             :                          
     456             :  */
     457           0 : PulsarRow* PulsarTable::lookup(ArrayTime refTime, Frequency refPulseFreq, double refPhase, int numBin) {
     458             :                 PulsarRow* aRow;
     459           0 :                 for (unsigned int i = 0; i < privateRows.size(); i++) {
     460           0 :                         aRow = privateRows.at(i); 
     461           0 :                         if (aRow->compareNoAutoInc(refTime, refPulseFreq, refPhase, numBin)) return aRow;
     462             :                 }                       
     463           0 :                 return 0;       
     464             : } 
     465             :         
     466             :                 
     467             : 
     468             :         
     469             : 
     470             : 
     471             : 
     472             : #ifndef WITHOUT_ACS
     473             :         using asdmIDL::PulsarTableIDL;
     474             : #endif
     475             : 
     476             : #ifndef WITHOUT_ACS
     477             :         // Conversion Methods
     478             : 
     479             :         PulsarTableIDL *PulsarTable::toIDL() {
     480             :                 PulsarTableIDL *x = new PulsarTableIDL ();
     481             :                 unsigned int nrow = size();
     482             :                 x->row.length(nrow);
     483             :                 vector<PulsarRow*> v = get();
     484             :                 for (unsigned int i = 0; i < nrow; ++i) {
     485             :                         //x->row[i] = *(v[i]->toIDL());
     486             :                         v[i]->toIDL(x->row[i]);
     487             :                 }
     488             :                 return x;
     489             :         }
     490             :         
     491             :         void PulsarTable::toIDL(asdmIDL::PulsarTableIDL& x) const {
     492             :                 unsigned int nrow = size();
     493             :                 x.row.length(nrow);
     494             :                 vector<PulsarRow*> v = get();
     495             :                 for (unsigned int i = 0; i < nrow; ++i) {
     496             :                         v[i]->toIDL(x.row[i]);
     497             :                 }
     498             :         }       
     499             : #endif
     500             :         
     501             : #ifndef WITHOUT_ACS
     502             :         void PulsarTable::fromIDL(PulsarTableIDL x) {
     503             :                 unsigned int nrow = x.row.length();
     504             :                 for (unsigned int i = 0; i < nrow; ++i) {
     505             :                         PulsarRow *tmp = newRow();
     506             :                         tmp->setFromIDL(x.row[i]);
     507             :                         // checkAndAdd(tmp);
     508             :                         add(tmp);
     509             :                 }
     510             :         }       
     511             : #endif
     512             : 
     513             :         
     514           0 :         string PulsarTable::toXML()  {
     515           0 :                 string buf;
     516             : 
     517           0 :                 buf.append("<?xml version=\"1.0\" encoding=\"ISO-8859-1\"?> ");
     518           0 :                 buf.append("<PulsarTable xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xmlns:plsr=\"http://Alma/XASDM/PulsarTable\" xsi:schemaLocation=\"http://Alma/XASDM/PulsarTable http://almaobservatory.org/XML/XASDM/4/PulsarTable.xsd\" schemaVersion=\"4\" schemaRevision=\"-1\">\n");
     519             :         
     520           0 :                 buf.append(entity.toXML());
     521           0 :                 string s = container.getEntity().toXML();
     522             :                 // Change the "Entity" tag to "ContainerEntity".
     523           0 :                 buf.append("<Container" + s.substr(1,s.length() - 1)+" ");
     524           0 :                 vector<PulsarRow*> v = get();
     525           0 :                 for (unsigned int i = 0; i < v.size(); ++i) {
     526             :                         try {
     527           0 :                                 buf.append(v[i]->toXML());
     528           0 :                         } catch (const NoSuchRow &e) {
     529             :                         }
     530           0 :                         buf.append("  ");
     531             :                 }               
     532           0 :                 buf.append("</PulsarTable> ");
     533           0 :                 return buf;
     534             :         }
     535             : 
     536             :         
     537           0 :         string PulsarTable::getVersion() const {
     538           0 :                 return version;
     539             :         }
     540             :         
     541             : 
     542           0 :         void PulsarTable::fromXML(string& tableInXML)  {
     543             :                 //
     544             :                 // Look for a version information in the schemaVersion of the XML
     545             :                 //
     546             :                 xmlDoc *doc;
     547             : #if LIBXML_VERSION >= 20703
     548           0 :         doc = xmlReadMemory(tableInXML.data(), tableInXML.size(), "XMLTableHeader.xml", NULL, XML_PARSE_NOBLANKS|XML_PARSE_HUGE);
     549             : #else
     550             :                 doc = xmlReadMemory(tableInXML.data(), tableInXML.size(), "XMLTableHeader.xml", NULL, XML_PARSE_NOBLANKS);
     551             : #endif
     552           0 :                 if ( doc == NULL )
     553           0 :                         throw ConversionException("Failed to parse the xmlHeader into a DOM structure.", "Pulsar");
     554             :                 
     555           0 :                 xmlNode* root_element = xmlDocGetRootElement(doc);
     556           0 :                 if ( root_element == NULL || root_element->type != XML_ELEMENT_NODE )
     557           0 :                 throw ConversionException("Failed to retrieve the root element in the DOM structure.", "Pulsar");
     558             :                 
     559           0 :         xmlChar * propValue = xmlGetProp(root_element, (const xmlChar *) "schemaVersion");
     560           0 :         if ( propValue != 0 ) {
     561           0 :                 version = string( (const char*) propValue);
     562           0 :                 xmlFree(propValue);             
     563             :         }
     564             :                                                                         
     565           0 :                 Parser xml(tableInXML);
     566           0 :                 if (!xml.isStr("<PulsarTable")) 
     567           0 :                         error();
     568             :                 // cout << "Parsing a PulsarTable" << endl;
     569           0 :                 string s = xml.getElement("<Entity","/>");
     570           0 :                 if (s.length() == 0) 
     571           0 :                         error();
     572           0 :                 Entity e;
     573           0 :                 e.setFromXML(s);
     574           0 :                 if (e.getEntityTypeName() != "PulsarTable")
     575           0 :                         error();
     576           0 :                 setEntity(e);
     577             :                 // Skip the container's entity; but, it has to be there.
     578           0 :                 s = xml.getElement("<ContainerEntity","/>");
     579           0 :                 if (s.length() == 0) 
     580           0 :                         error();
     581             : 
     582             :                 // Get each row in the table.
     583           0 :                 s = xml.getElementContent("<row>","</row>");
     584             :                 PulsarRow *row;
     585           0 :                 if (getContainer().checkRowUniqueness()) {
     586             :                         try {
     587           0 :                                 while (s.length() != 0) {
     588           0 :                                         row = newRow();
     589           0 :                                         row->setFromXML(s);
     590           0 :                                         checkAndAdd(row);
     591           0 :                                         s = xml.getElementContent("<row>","</row>");
     592             :                                 }
     593             :                                 
     594             :                         }
     595           0 :                         catch (const DuplicateKey &e1) {
     596           0 :                                 throw ConversionException(e1.getMessage(),"PulsarTable");
     597             :                         } 
     598           0 :                         catch (const UniquenessViolationException &e1) {
     599           0 :                                 throw ConversionException(e1.getMessage(),"PulsarTable");     
     600             :                         }
     601           0 :                         catch (...) {
     602             :                                 // cout << "Unexpected error in PulsarTable::checkAndAdd called from PulsarTable::fromXML " << endl;
     603             :                         }
     604             :                 }
     605             :                 else {
     606             :                         try {
     607           0 :                                 while (s.length() != 0) {
     608           0 :                                         row = newRow();
     609           0 :                                         row->setFromXML(s);
     610           0 :                                         addWithoutCheckingUnique(row);
     611           0 :                                         s = xml.getElementContent("<row>","</row>");
     612             :                                 }
     613             :                         }
     614           0 :                         catch (const DuplicateKey &e1) {
     615           0 :                                 throw ConversionException(e1.getMessage(),"PulsarTable");
     616             :                         } 
     617           0 :                         catch (...) {
     618             :                                 // cout << "Unexpected error in PulsarTable::addWithoutCheckingUnique called from PulsarTable::fromXML " << endl;
     619             :                         }
     620             :                 }                               
     621             :                                 
     622             :                                 
     623           0 :                 if (!xml.isStr("</PulsarTable>")) 
     624           0 :                 error();
     625             :                 
     626             :                 //Does not change the convention defined in the model.  
     627             :                 //archiveAsBin = false;
     628             :                 //fileAsBin = false;
     629             : 
     630             :                 // clean up the xmlDoc pointer
     631           0 :                 if ( doc != NULL ) xmlFreeDoc(doc);
     632             :                 
     633           0 :         }
     634             : 
     635             :         
     636           0 :         void PulsarTable::error()  {
     637           0 :                 throw ConversionException("Invalid xml document","Pulsar");
     638             :         }
     639             :         
     640             :         
     641           0 :         string PulsarTable::MIMEXMLPart(const asdm::ByteOrder* byteOrder) {
     642           0 :                 string UID = getEntity().getEntityId().toString();
     643           0 :                 string withoutUID = UID.substr(6);
     644           0 :                 string containerUID = getContainer().getEntity().getEntityId().toString();
     645           0 :                 ostringstream oss;
     646           0 :                 oss << "<?xml version='1.0'  encoding='ISO-8859-1'?>";
     647           0 :                 oss << "\n";
     648           0 :                 oss << "<PulsarTable xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xmlns:plsr=\"http://Alma/XASDM/PulsarTable\" xsi:schemaLocation=\"http://Alma/XASDM/PulsarTable http://almaobservatory.org/XML/XASDM/4/PulsarTable.xsd\" schemaVersion=\"4\" schemaRevision=\"-1\">\n";
     649           0 :                 oss<< "<Entity entityId='"<<UID<<"' entityIdEncrypted='na' entityTypeName='PulsarTable' schemaVersion='1' documentVersion='1'/>\n";
     650           0 :                 oss<< "<ContainerEntity entityId='"<<containerUID<<"' entityIdEncrypted='na' entityTypeName='ASDM' schemaVersion='1' documentVersion='1'/>\n";
     651           0 :                 oss << "<BulkStoreRef file_id='"<<withoutUID<<"' byteOrder='"<<byteOrder->toString()<<"' />\n";
     652           0 :                 oss << "<Attributes>\n";
     653             : 
     654           0 :                 oss << "<pulsarId/>\n"; 
     655           0 :                 oss << "<refTime/>\n"; 
     656           0 :                 oss << "<refPulseFreq/>\n"; 
     657           0 :                 oss << "<refPhase/>\n"; 
     658           0 :                 oss << "<numBin/>\n"; 
     659             : 
     660           0 :                 oss << "<numPoly/>\n"; 
     661           0 :                 oss << "<phasePoly/>\n"; 
     662           0 :                 oss << "<timeSpan/>\n"; 
     663           0 :                 oss << "<startPhaseBin/>\n"; 
     664           0 :                 oss << "<endPhaseBin/>\n"; 
     665           0 :                 oss << "<dispersionMeasure/>\n"; 
     666           0 :                 oss << "<refFrequency/>\n"; 
     667           0 :                 oss << "</Attributes>\n";         
     668           0 :                 oss << "</PulsarTable>\n";
     669             : 
     670           0 :                 return oss.str();                               
     671             :         }
     672             :         
     673           0 :         string PulsarTable::toMIME(const asdm::ByteOrder* byteOrder) {
     674           0 :                 EndianOSStream eoss(byteOrder);
     675             :                 
     676           0 :                 string UID = getEntity().getEntityId().toString();
     677             :                 
     678             :                 // The MIME Header
     679           0 :                 eoss <<"MIME-Version: 1.0";
     680           0 :                 eoss << "\n";
     681           0 :                 eoss << "Content-Type: Multipart/Related; boundary='MIME_boundary'; type='text/xml'; start= '<header.xml>'";
     682           0 :                 eoss <<"\n";
     683           0 :                 eoss <<"Content-Description: Correlator";
     684           0 :                 eoss <<"\n";
     685           0 :                 eoss <<"alma-uid:" << UID;
     686           0 :                 eoss <<"\n";
     687           0 :                 eoss <<"\n";            
     688             :                 
     689             :                 // The MIME XML part header.
     690           0 :                 eoss <<"--MIME_boundary";
     691           0 :                 eoss <<"\n";
     692           0 :                 eoss <<"Content-Type: text/xml; charset='ISO-8859-1'";
     693           0 :                 eoss <<"\n";
     694           0 :                 eoss <<"Content-Transfer-Encoding: 8bit";
     695           0 :                 eoss <<"\n";
     696           0 :                 eoss <<"Content-ID: <header.xml>";
     697           0 :                 eoss <<"\n";
     698           0 :                 eoss <<"\n";
     699             :                 
     700             :                 // The MIME XML part content.
     701           0 :                 eoss << MIMEXMLPart(byteOrder);
     702             : 
     703             :                 // The MIME binary part header
     704           0 :                 eoss <<"--MIME_boundary";
     705           0 :                 eoss <<"\n";
     706           0 :                 eoss <<"Content-Type: binary/octet-stream";
     707           0 :                 eoss <<"\n";
     708           0 :                 eoss <<"Content-ID: <content.bin>";
     709           0 :                 eoss <<"\n";
     710           0 :                 eoss <<"\n";    
     711             :                 
     712             :                 // The MIME binary content
     713           0 :                 entity.toBin(eoss);
     714           0 :                 container.getEntity().toBin(eoss);
     715           0 :                 eoss.writeInt((int) privateRows.size());
     716           0 :                 for (unsigned int i = 0; i < privateRows.size(); i++) {
     717           0 :                         privateRows.at(i)->toBin(eoss);      
     718             :                 }
     719             :                 
     720             :                 // The closing MIME boundary
     721           0 :                 eoss << "\n--MIME_boundary--";
     722           0 :                 eoss << "\n";
     723             :                 
     724           0 :                 return eoss.str();      
     725             :         }
     726             : 
     727             :         
     728           0 :         void PulsarTable::setFromMIME(const string & mimeMsg) {
     729           0 :     string xmlPartMIMEHeader = "Content-ID: <header.xml>\n\n";
     730             :     
     731           0 :     string binPartMIMEHeader = "--MIME_boundary\nContent-Type: binary/octet-stream\nContent-ID: <content.bin>\n\n";
     732             :     
     733             :     // Detect the XML header.
     734           0 :     string::size_type loc0 = mimeMsg.find(xmlPartMIMEHeader, 0);
     735           0 :     if ( loc0 == string::npos) {
     736             :       // let's try with CRLFs
     737           0 :       xmlPartMIMEHeader = "Content-ID: <header.xml>\r\n\r\n";
     738           0 :       loc0 = mimeMsg.find(xmlPartMIMEHeader, 0);
     739           0 :       if  ( loc0 == string::npos ) 
     740           0 :               throw ConversionException("Failed to detect the beginning of the XML header", "Pulsar");
     741             :     }
     742             : 
     743           0 :     loc0 += xmlPartMIMEHeader.size();
     744             :     
     745             :     // Look for the string announcing the binary part.
     746           0 :     string::size_type loc1 = mimeMsg.find( binPartMIMEHeader, loc0 );
     747             :     
     748           0 :     if ( loc1 == string::npos ) {
     749           0 :       throw ConversionException("Failed to detect the beginning of the binary part", "Pulsar");
     750             :     }
     751             :     
     752             :     //
     753             :     // Extract the xmlHeader and analyze it to find out what is the byte order and the sequence
     754             :     // of attribute names.
     755             :     //
     756           0 :     string xmlHeader = mimeMsg.substr(loc0, loc1-loc0);
     757             :     xmlDoc *doc;
     758           0 :     doc = xmlReadMemory(xmlHeader.data(), xmlHeader.size(), "BinaryTableHeader.xml", NULL, XML_PARSE_NOBLANKS);
     759           0 :     if ( doc == NULL ) 
     760           0 :       throw ConversionException("Failed to parse the xmlHeader into a DOM structure.", "Pulsar");
     761             :     
     762             :    // This vector will be filled by the names of  all the attributes of the table
     763             :    // in the order in which they are expected to be found in the binary representation.
     764             :    //
     765           0 :     vector<string> attributesSeq;
     766             :       
     767           0 :     xmlNode* root_element = xmlDocGetRootElement(doc);
     768           0 :     if ( root_element == NULL || root_element->type != XML_ELEMENT_NODE )
     769           0 :       throw ConversionException("Failed to parse the xmlHeader into a DOM structure.", "Pulsar");
     770             :     
     771           0 :     const ByteOrder* byteOrder=0;
     772           0 :     if ( string("ASDMBinaryTable").compare((const char*) root_element->name) == 0) {
     773             :       // Then it's an "old fashioned" MIME file for tables.
     774             :       // Just try to deserialize it with Big_Endian for the bytes ordering.
     775           0 :       byteOrder = asdm::ByteOrder::Big_Endian;
     776             :       
     777             :          //
     778             :     // Let's consider a  default order for the sequence of attributes.
     779             :     //
     780             :     
     781             :          
     782           0 :     attributesSeq.push_back("pulsarId") ; 
     783             :          
     784           0 :     attributesSeq.push_back("refTime") ; 
     785             :          
     786           0 :     attributesSeq.push_back("refPulseFreq") ; 
     787             :          
     788           0 :     attributesSeq.push_back("refPhase") ; 
     789             :          
     790           0 :     attributesSeq.push_back("numBin") ; 
     791             :         
     792             :          
     793           0 :     attributesSeq.push_back("numPoly") ; 
     794             :          
     795           0 :     attributesSeq.push_back("phasePoly") ; 
     796             :          
     797           0 :     attributesSeq.push_back("timeSpan") ; 
     798             :          
     799           0 :     attributesSeq.push_back("startPhaseBin") ; 
     800             :          
     801           0 :     attributesSeq.push_back("endPhaseBin") ; 
     802             :          
     803           0 :     attributesSeq.push_back("dispersionMeasure") ; 
     804             :          
     805           0 :     attributesSeq.push_back("refFrequency") ; 
     806             :         
     807             :      
     808             :     
     809             :     
     810             :     // And decide that it has version == "2"
     811           0 :     version = "2";         
     812             :      }
     813           0 :     else if (string("PulsarTable").compare((const char*) root_element->name) == 0) {
     814             :       // It's a new (and correct) MIME file for tables.
     815             :       //
     816             :       // 1st )  Look for a BulkStoreRef element with an attribute byteOrder.
     817             :       //
     818           0 :       xmlNode* bulkStoreRef = 0;
     819           0 :       xmlNode* child = root_element->children;
     820             :       
     821           0 :       if (xmlHasProp(root_element, (const xmlChar*) "schemaVersion")) {
     822           0 :         xmlChar * value = xmlGetProp(root_element, (const xmlChar *) "schemaVersion");
     823           0 :         version = string ((const char *) value);
     824           0 :         xmlFree(value); 
     825             :       }
     826             :       
     827             :       // Skip the two first children (Entity and ContainerEntity).
     828           0 :       bulkStoreRef = (child ==  0) ? 0 : ( (child->next) == 0 ? 0 : child->next->next );
     829             :       
     830           0 :       if ( bulkStoreRef == 0 || (bulkStoreRef->type != XML_ELEMENT_NODE)  || (string("BulkStoreRef").compare((const char*) bulkStoreRef->name) != 0))
     831           0 :         throw ConversionException ("Could not find the element '/PulsarTable/BulkStoreRef'. Invalid XML header '"+ xmlHeader + "'.", "Pulsar");
     832             :         
     833             :       // We found BulkStoreRef, now look for its attribute byteOrder.
     834           0 :       _xmlAttr* byteOrderAttr = 0;
     835           0 :       for (struct _xmlAttr* attr = bulkStoreRef->properties; attr; attr = attr->next) 
     836           0 :           if (string("byteOrder").compare((const char*) attr->name) == 0) {
     837           0 :            byteOrderAttr = attr;
     838           0 :            break;
     839             :          }
     840             :       
     841           0 :       if (byteOrderAttr == 0) 
     842           0 :              throw ConversionException("Could not find the element '/PulsarTable/BulkStoreRef/@byteOrder'. Invalid XML header '" + xmlHeader +"'.", "Pulsar");
     843             :       
     844           0 :       string byteOrderValue = string((const char*) byteOrderAttr->children->content);
     845           0 :       if (!(byteOrder = asdm::ByteOrder::fromString(byteOrderValue)))
     846           0 :                 throw ConversionException("No valid value retrieved for the element '/PulsarTable/BulkStoreRef/@byteOrder'. Invalid XML header '" + xmlHeader + "'.", "Pulsar");
     847             :                 
     848             :          //
     849             :          // 2nd) Look for the Attributes element and grab the names of the elements it contains.
     850             :          //
     851           0 :          xmlNode* attributes = bulkStoreRef->next;
     852           0 :      if ( attributes == 0 || (attributes->type != XML_ELEMENT_NODE)  || (string("Attributes").compare((const char*) attributes->name) != 0))     
     853           0 :         throw ConversionException ("Could not find the element '/PulsarTable/Attributes'. Invalid XML header '"+ xmlHeader + "'.", "Pulsar");
     854             :  
     855           0 :         xmlNode* childOfAttributes = attributes->children;
     856             :         
     857           0 :         while ( childOfAttributes != 0 && (childOfAttributes->type == XML_ELEMENT_NODE) ) {
     858           0 :                 attributesSeq.push_back(string((const char*) childOfAttributes->name));
     859           0 :                 childOfAttributes = childOfAttributes->next;
     860             :     }
     861             :     }
     862             :     // Create an EndianISStream from the substring containing the binary part.
     863           0 :     EndianISStream eiss(mimeMsg.substr(loc1+binPartMIMEHeader.size()), byteOrder);
     864             :     
     865           0 :     entity = Entity::fromBin((EndianIStream&) eiss);
     866             :     
     867             :     // We do nothing with that but we have to read it.
     868           0 :     Entity containerEntity = Entity::fromBin((EndianIStream&) eiss);
     869             : 
     870             :         // Let's read numRows but ignore it and rely on the value specified in the ASDM.xml file.    
     871           0 :     int numRows = ((EndianIStream&) eiss).readInt();
     872           0 :     if ((numRows != -1)                        // Then these are *not* data produced at the EVLA.
     873           0 :         && ((unsigned int) numRows != this->declaredSize )) { // Then the declared size (in ASDM.xml) is not equal to the one 
     874             :                                                // written into the binary representation of the table.
     875           0 :                 cout << "The a number of rows ('" 
     876             :                          << numRows
     877           0 :                          << "') declared in the binary representation of the table is different from the one declared in ASDM.xml ('"
     878           0 :                          << this->declaredSize
     879           0 :                          << "'). I'll proceed with the value declared in ASDM.xml"
     880           0 :                          << endl;
     881             :     }                                           
     882             : 
     883           0 :         if (getContainer().checkRowUniqueness()) {
     884             :         try {
     885           0 :                 for (uint32_t i = 0; i < this->declaredSize; i++) {
     886           0 :                                 PulsarRow* aRow = PulsarRow::fromBin((EndianIStream&) eiss, *this, attributesSeq);
     887           0 :                                 checkAndAdd(aRow);
     888             :                 }
     889             :         }
     890           0 :         catch (const DuplicateKey &e) {
     891             :                 throw ConversionException("Error while writing binary data , the message was "
     892           0 :                                 + e.getMessage(), "Pulsar");
     893             :         }
     894           0 :         catch (const TagFormatException &e) {
     895             :                  throw ConversionException("Error while reading binary data , the message was "
     896           0 :                                 + e.getMessage(), "Pulsar");
     897             :         }
     898             :     }
     899             :     else {
     900           0 :                 for (uint32_t i = 0; i < this->declaredSize; i++) {
     901           0 :                         PulsarRow* aRow = PulsarRow::fromBin((EndianIStream&) eiss, *this, attributesSeq);
     902           0 :                         append(aRow);
     903             :         }       
     904             :     }
     905             :     //Does not change the convention defined in the model.      
     906             :     //archiveAsBin = true;
     907             :     //fileAsBin = true;
     908           0 :     if ( doc != NULL ) xmlFreeDoc(doc);
     909             : 
     910           0 :         }
     911             :         
     912           0 :         void PulsarTable::setUnknownAttributeBinaryReader(const string& attributeName, BinaryAttributeReaderFunctor* barFctr) {
     913             :                 //
     914             :                 // Is this attribute really unknown ?
     915             :                 //
     916           0 :                 for (vector<string>::const_iterator iter = attributesNamesOfPulsar_v.begin(); iter != attributesNamesOfPulsar_v.end(); iter++) {
     917           0 :                         if ((*iter).compare(attributeName) == 0) 
     918           0 :                                 throw ConversionException("the attribute '"+attributeName+"' is known you can't override the way it's read in the MIME binary file containing the table.", "Pulsar"); 
     919             :                 }
     920             :                 
     921             :                 // Ok then register the functor to activate when an unknown attribute is met during the reading of a binary table?
     922           0 :                 unknownAttributes2Functors[attributeName] = barFctr;
     923           0 :         }
     924             :         
     925           0 :         BinaryAttributeReaderFunctor* PulsarTable::getUnknownAttributeBinaryReader(const string& attributeName) const {
     926           0 :                 map<string, BinaryAttributeReaderFunctor*>::const_iterator iter = unknownAttributes2Functors.find(attributeName);
     927           0 :                 return (iter == unknownAttributes2Functors.end()) ? 0 : iter->second;
     928             :         }
     929             : 
     930             :         
     931           0 :         void PulsarTable::toFile(string directory) {
     932           0 :                 if (!directoryExists(directory.c_str()) &&
     933           0 :                         !createPath(directory.c_str())) {
     934           0 :                         throw ConversionException("Could not create directory " , directory);
     935             :                 }
     936             : 
     937           0 :                 string fileName = directory + "/Pulsar.xml";
     938           0 :                 ofstream tableout(fileName.c_str(),ios::out|ios::trunc);
     939           0 :                 if (tableout.rdstate() == ostream::failbit)
     940           0 :                         throw ConversionException("Could not open file " + fileName + " to write ", "Pulsar");
     941           0 :                 if (fileAsBin) 
     942           0 :                         tableout << MIMEXMLPart();
     943             :                 else
     944           0 :                         tableout << toXML() << endl;
     945           0 :                 tableout.close();
     946           0 :                 if (tableout.rdstate() == ostream::failbit)
     947           0 :                         throw ConversionException("Could not close file " + fileName, "Pulsar");
     948             : 
     949           0 :                 if (fileAsBin) {
     950             :                         // write the bin serialized
     951           0 :                         string fileName = directory + "/Pulsar.bin";
     952           0 :                         ofstream tableout(fileName.c_str(),ios::out|ios::trunc);
     953           0 :                         if (tableout.rdstate() == ostream::failbit)
     954           0 :                                 throw ConversionException("Could not open file " + fileName + " to write ", "Pulsar");
     955           0 :                         tableout << toMIME() << endl;
     956           0 :                         tableout.close();
     957           0 :                         if (tableout.rdstate() == ostream::failbit)
     958           0 :                                 throw ConversionException("Could not close file " + fileName, "Pulsar");
     959             :                 }
     960           0 :         }
     961             : 
     962             :         
     963           0 :         void PulsarTable::setFromFile(const string& directory) {
     964             : #ifndef WITHOUT_BOOST
     965             :     if (boost::filesystem::exists(boost::filesystem::path(uniqSlashes(directory + "/Pulsar.xml"))))
     966             :       setFromXMLFile(directory);
     967             :     else if (boost::filesystem::exists(boost::filesystem::path(uniqSlashes(directory + "/Pulsar.bin"))))
     968             :       setFromMIMEFile(directory);
     969             : #else 
     970             :     // alternative in Misc.h
     971           0 :     if (file_exists(uniqSlashes(directory + "/Pulsar.xml")))
     972           0 :       setFromXMLFile(directory);
     973           0 :     else if (file_exists(uniqSlashes(directory + "/Pulsar.bin")))
     974           0 :       setFromMIMEFile(directory);
     975             : #endif
     976             :     else
     977           0 :       throw ConversionException("No file found for the Pulsar table", "Pulsar");
     978           0 :         }                       
     979             : 
     980             :         
     981           0 :   void PulsarTable::setFromMIMEFile(const string& directory) {
     982           0 :     string tablePath ;
     983             :     
     984           0 :     tablePath = directory + "/Pulsar.bin";
     985           0 :     ifstream tablefile(tablePath.c_str(), ios::in|ios::binary);
     986           0 :     if (!tablefile.is_open()) { 
     987           0 :       throw ConversionException("Could not open file " + tablePath, "Pulsar");
     988             :     }
     989             :     // Read in a stringstream.
     990           0 :     stringstream ss; ss << tablefile.rdbuf();
     991             :     
     992           0 :     if (tablefile.rdstate() == istream::failbit || tablefile.rdstate() == istream::badbit) {
     993           0 :       throw ConversionException("Error reading file " + tablePath,"Pulsar");
     994             :     }
     995             :     
     996             :     // And close.
     997           0 :     tablefile.close();
     998           0 :     if (tablefile.rdstate() == istream::failbit)
     999           0 :       throw ConversionException("Could not close file " + tablePath,"Pulsar");
    1000             :     
    1001           0 :     setFromMIME(ss.str());
    1002           0 :   }     
    1003             : /* 
    1004             :   void PulsarTable::openMIMEFile (const string& directory) {
    1005             :                 
    1006             :         // Open the file.
    1007             :         string tablePath ;
    1008             :     tablePath = directory + "/Pulsar.bin";
    1009             :     ifstream tablefile(tablePath.c_str(), ios::in|ios::binary);
    1010             :     if (!tablefile.is_open())
    1011             :       throw ConversionException("Could not open file " + tablePath, "Pulsar");
    1012             :       
    1013             :         // Locate the xmlPartMIMEHeader.
    1014             :     string xmlPartMIMEHeader = "CONTENT-ID: <HEADER.XML>\n\n";
    1015             :     CharComparator comparator;
    1016             :     istreambuf_iterator<char> BEGIN(tablefile.rdbuf());
    1017             :     istreambuf_iterator<char> END;
    1018             :     istreambuf_iterator<char> it = search(BEGIN, END, xmlPartMIMEHeader.begin(), xmlPartMIMEHeader.end(), comparator);
    1019             :     if (it == END) 
    1020             :         throw ConversionException("failed to detect the beginning of the XML header", "Pulsar");
    1021             :     
    1022             :     // Locate the binaryPartMIMEHeader while accumulating the characters of the xml header.     
    1023             :     string binPartMIMEHeader = "--MIME_BOUNDARY\nCONTENT-TYPE: BINARY/OCTET-STREAM\nCONTENT-ID: <CONTENT.BIN>\n\n";
    1024             :     string xmlHeader;
    1025             :         CharCompAccumulator compaccumulator(&xmlHeader, 100000);
    1026             :         ++it;
    1027             :         it = search(it, END, binPartMIMEHeader.begin(), binPartMIMEHeader.end(), compaccumulator);
    1028             :         if (it == END) 
    1029             :                 throw ConversionException("failed to detect the beginning of the binary part", "Pulsar");
    1030             :         
    1031             :         cout << xmlHeader << endl;
    1032             :         //
    1033             :         // We have the xmlHeader , let's parse it.
    1034             :         //
    1035             :         xmlDoc *doc;
    1036             :     doc = xmlReadMemory(xmlHeader.data(), xmlHeader.size(), "BinaryTableHeader.xml", NULL, XML_PARSE_NOBLANKS);
    1037             :     if ( doc == NULL ) 
    1038             :       throw ConversionException("Failed to parse the xmlHeader into a DOM structure.", "Pulsar");
    1039             :     
    1040             :    // This vector will be filled by the names of  all the attributes of the table
    1041             :    // in the order in which they are expected to be found in the binary representation.
    1042             :    //
    1043             :     vector<string> attributesSeq(attributesNamesInBinOfPulsar_v);
    1044             :       
    1045             :     xmlNode* root_element = xmlDocGetRootElement(doc);
    1046             :     if ( root_element == NULL || root_element->type != XML_ELEMENT_NODE )
    1047             :       throw ConversionException("Failed to parse the xmlHeader into a DOM structure.", "Pulsar");
    1048             :     
    1049             :     const ByteOrder* byteOrder=0;
    1050             :     if ( string("ASDMBinaryTable").compare((const char*) root_element->name) == 0) {
    1051             :       // Then it's an "old fashioned" MIME file for tables.
    1052             :       // Just try to deserialize it with Big_Endian for the bytes ordering.
    1053             :       byteOrder = asdm::ByteOrder::Big_Endian;
    1054             :         
    1055             :       // And decide that it has version == "2"
    1056             :     version = "2";         
    1057             :      }
    1058             :     else if (string("PulsarTable").compare((const char*) root_element->name) == 0) {
    1059             :       // It's a new (and correct) MIME file for tables.
    1060             :       //
    1061             :       // 1st )  Look for a BulkStoreRef element with an attribute byteOrder.
    1062             :       //
    1063             :       xmlNode* bulkStoreRef = 0;
    1064             :       xmlNode* child = root_element->children;
    1065             :       
    1066             :       if (xmlHasProp(root_element, (const xmlChar*) "schemaVersion")) {
    1067             :         xmlChar * value = xmlGetProp(root_element, (const xmlChar *) "schemaVersion");
    1068             :         version = string ((const char *) value);
    1069             :         xmlFree(value); 
    1070             :       }
    1071             :       
    1072             :       // Skip the two first children (Entity and ContainerEntity).
    1073             :       bulkStoreRef = (child ==  0) ? 0 : ( (child->next) == 0 ? 0 : child->next->next );
    1074             :       
    1075             :       if ( bulkStoreRef == 0 || (bulkStoreRef->type != XML_ELEMENT_NODE)  || (string("BulkStoreRef").compare((const char*) bulkStoreRef->name) != 0))
    1076             :         throw ConversionException ("Could not find the element '/PulsarTable/BulkStoreRef'. Invalid XML header '"+ xmlHeader + "'.", "Pulsar");
    1077             :         
    1078             :       // We found BulkStoreRef, now look for its attribute byteOrder.
    1079             :       _xmlAttr* byteOrderAttr = 0;
    1080             :       for (struct _xmlAttr* attr = bulkStoreRef->properties; attr; attr = attr->next) 
    1081             :           if (string("byteOrder").compare((const char*) attr->name) == 0) {
    1082             :            byteOrderAttr = attr;
    1083             :            break;
    1084             :          }
    1085             :       
    1086             :       if (byteOrderAttr == 0) 
    1087             :              throw ConversionException("Could not find the element '/PulsarTable/BulkStoreRef/@byteOrder'. Invalid XML header '" + xmlHeader +"'.", "Pulsar");
    1088             :       
    1089             :       string byteOrderValue = string((const char*) byteOrderAttr->children->content);
    1090             :       if (!(byteOrder = asdm::ByteOrder::fromString(byteOrderValue)))
    1091             :                 throw ConversionException("No valid value retrieved for the element '/PulsarTable/BulkStoreRef/@byteOrder'. Invalid XML header '" + xmlHeader + "'.", "Pulsar");
    1092             :                 
    1093             :          //
    1094             :          // 2nd) Look for the Attributes element and grab the names of the elements it contains.
    1095             :          //
    1096             :          xmlNode* attributes = bulkStoreRef->next;
    1097             :      if ( attributes == 0 || (attributes->type != XML_ELEMENT_NODE)  || (string("Attributes").compare((const char*) attributes->name) != 0))     
    1098             :         throw ConversionException ("Could not find the element '/PulsarTable/Attributes'. Invalid XML header '"+ xmlHeader + "'.", "Pulsar");
    1099             :  
    1100             :         xmlNode* childOfAttributes = attributes->children;
    1101             :         
    1102             :         while ( childOfAttributes != 0 && (childOfAttributes->type == XML_ELEMENT_NODE) ) {
    1103             :                 attributesSeq.push_back(string((const char*) childOfAttributes->name));
    1104             :                 childOfAttributes = childOfAttributes->next;
    1105             :     }
    1106             :     }
    1107             :     // Create an EndianISStream from the substring containing the binary part.
    1108             :     EndianIFStream eifs(&tablefile, byteOrder);
    1109             :     
    1110             :     entity = Entity::fromBin((EndianIStream &) eifs);
    1111             :     
    1112             :     // We do nothing with that but we have to read it.
    1113             :     Entity containerEntity = Entity::fromBin((EndianIStream &) eifs);
    1114             : 
    1115             :         // Let's read numRows but ignore it and rely on the value specified in the ASDM.xml file.    
    1116             :     int numRows = eifs.readInt();
    1117             :     if ((numRows != -1)                        // Then these are *not* data produced at the EVLA.
    1118             :         && ((unsigned int) numRows != this->declaredSize )) { // Then the declared size (in ASDM.xml) is not equal to the one 
    1119             :                                                // written into the binary representation of the table.
    1120             :                 cout << "The a number of rows ('" 
    1121             :                          << numRows
    1122             :                          << "') declared in the binary representation of the table is different from the one declared in ASDM.xml ('"
    1123             :                          << this->declaredSize
    1124             :                          << "'). I'll proceed with the value declared in ASDM.xml"
    1125             :                          << endl;
    1126             :     }
    1127             :     // clean up xmlDoc pointer
    1128             :     if ( doc != NULL ) xmlFreeDoc(doc);    
    1129             :   } 
    1130             :  */
    1131             : 
    1132             :         
    1133           0 : void PulsarTable::setFromXMLFile(const string& directory) {
    1134           0 :     string tablePath ;
    1135             :     
    1136           0 :     tablePath = directory + "/Pulsar.xml";
    1137             :     
    1138             :     /*
    1139             :     ifstream tablefile(tablePath.c_str(), ios::in|ios::binary);
    1140             :     if (!tablefile.is_open()) { 
    1141             :       throw ConversionException("Could not open file " + tablePath, "Pulsar");
    1142             :     }
    1143             :       // Read in a stringstream.
    1144             :     stringstream ss;
    1145             :     ss << tablefile.rdbuf();
    1146             :     
    1147             :     if  (tablefile.rdstate() == istream::failbit || tablefile.rdstate() == istream::badbit) {
    1148             :       throw ConversionException("Error reading file '" + tablePath + "'", "Pulsar");
    1149             :     }
    1150             :     
    1151             :     // And close
    1152             :     tablefile.close();
    1153             :     if (tablefile.rdstate() == istream::failbit)
    1154             :       throw ConversionException("Could not close file '" + tablePath + "'", "Pulsar");
    1155             : 
    1156             :     // Let's make a string out of the stringstream content and empty the stringstream.
    1157             :     string xmlDocument = ss.str(); ss.str("");
    1158             :         
    1159             :     // Let's make a very primitive check to decide
    1160             :     // whether the XML content represents the table
    1161             :     // or refers to it via a <BulkStoreRef element.
    1162             :     */
    1163             :     
    1164           0 :     string xmlDocument;
    1165             :     try {
    1166           0 :         xmlDocument = getContainer().getXSLTransformer()(tablePath);
    1167           0 :         if (getenv("ASDM_DEBUG")) cout << "About to read " << tablePath << endl;
    1168             :     }
    1169           0 :     catch (const XSLTransformerException &e) {
    1170           0 :         throw ConversionException("Caugth an exception whose message is '" + e.getMessage() + "'.", "Pulsar");
    1171             :     }
    1172             :     
    1173           0 :     if (xmlDocument.find("<BulkStoreRef") != string::npos)
    1174           0 :       setFromMIMEFile(directory);
    1175             :     else
    1176           0 :       fromXML(xmlDocument);
    1177           0 :   }
    1178             : 
    1179             :         
    1180             : 
    1181             :         
    1182             : 
    1183             :                         
    1184             :         
    1185             :         
    1186             : 
    1187             :         
    1188           0 :         void PulsarTable::autoIncrement(string key, PulsarRow* x) {
    1189           0 :                 map<string, int>::iterator iter;
    1190           0 :                 if ((iter=noAutoIncIds.find(key)) == noAutoIncIds.end()) {
    1191             :                         // There is not yet a combination of the non autoinc attributes values in the hashtable
    1192             :                         
    1193             :                         // Initialize  pulsarId to Tag(0).
    1194           0 :                         x->setPulsarId(Tag(0,  TagType::Pulsar));
    1195             :                         
    1196             :                         // Record it in the map.                
    1197           0 :                         noAutoIncIds.insert(make_pair(key, 0));                 
    1198             :                 } 
    1199             :                 else {
    1200             :                         // There is already a combination of the non autoinc attributes values in the hashtable
    1201             :                         // Increment its value.
    1202           0 :                         int n = iter->second + 1; 
    1203             :                         
    1204             :                         // Initialize  pulsarId to Tag(n).
    1205           0 :                         x->setPulsarId(Tag(n, TagType::Pulsar));
    1206             :                         
    1207             :                         // Record it in the map.                
    1208           0 :                         noAutoIncIds.insert(make_pair(key, n));                         
    1209             :                 }               
    1210           0 :         }
    1211             :         
    1212             : } // End namespace asdm
    1213             :  

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