Line data    Source code

       1             : //# RFRowClipper.h: this defines RFRowClipper
       2             : //# Copyright (C) 2000,2001
       3             : //# Associated Universities, Inc. Washington DC, USA.
       4             : //#
       5             : //# This library is free software; you can redistribute it and/or modify it
       6             : //# under the terms of the GNU Library General Public License as published by
       7             : //# the Free Software Foundation; either version 2 of the License, or (at your
       8             : //# option) any later version.
       9             : //#
      10             : //# This library is distributed in the hope that it will be useful, but WITHOUT
      11             : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
      12             : //# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
      13             : //# License for more details.
      14             : //#
      15             : //# You should have received a copy of the GNU Library General Public License
      16             : //# along with this library; if not, write to the Free Software Foundation,
      17             : //# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
      18             : //#
      19             : //# Correspondence concerning AIPS++ should be addressed as follows:
      20             : //#        Internet email: aips2-request@nrao.edu.
      21             : //#        Postal address: AIPS++ Project Office
      22             : //#                        National Radio Astronomy Observatory
      23             : //#                        520 Edgemont Road
      24             : //#                        Charlottesville, VA 22903-2475 USA
      25             : //#
      26             : //# $Id$
      27             : #ifndef FLAGGING_RFROWCLIPPER_H
      28             : #define FLAGGING_RFROWCLIPPER_H
      29             : 
      30             : #include <flagging/Flagging/RFCommon.h>
      31             : #include <casacore/casa/Arrays/Vector.h>
      32             : #include <casacore/casa/Arrays/Matrix.h>
      33             :     
      34             : namespace casa { //# NAMESPACE CASA - BEGIN
      35             : 
      36             : class RFFlagCube;
      37             : class RFChunkStats;
      38             :     
      39             : // <summary>
      40             : // RFRowClipper: flags rows based on their noise level
      41             : // </summary>
      42             : 
      43             : // <use visibility=local>
      44             : 
      45             : // <reviewed reviewer="" date="" tests="" demos="">
      46             : // </reviewed>
      47             : 
      48             : // <synopsis>
      49             : // RFRowClipper accumulates per-row noise estimates in an [NIFR,NTIME] matrix.
      50             : // After each pass it performs flagging of rows with excessive noise (w/respect 
      51             : // to a sliding median per IFR, over time).
      52             : // </synopsis>
      53             : //
      54             : // <motivation>
      55             : // Several flagging agents produce per-row noise estimates and can flag based
      56             : // on them. Hence, a commmon implementation was desired.
      57             : // </motivation>
      58             : //
      59             : // <todo asof="2001/04/16">
      60             : //   <li> add this feature
      61             : //   <li> fix this bug
      62             : //   <li> start discussion of this possible extension
      63             : // </todo>
      64             : 
      65             : class RFRowClipper : public FlaggerEnums
      66             : {
      67             : public:
      68             :   // construct from a chunk accessor and flag cube. Clip is the clipping
      69             :   // level, HW is the sliding median window half-width, MAXP is maximum
      70             :   // iterative passes.
      71             :   RFRowClipper  ( RFChunkStats &chunk,RFFlagCube &flag,casacore::Float clip,casacore::uInt hw=6,casacore::uInt maxp=5 );
      72             :   // destructor
      73           0 :   ~RFRowClipper () {}; 
      74             :   
      75             :   // initialize for an [NI,NT] matrix
      76             :   void init     ( casacore::uInt ni,casacore::uInt nt );
      77             :   // deallocate matrices
      78             :   void cleanup  ();
      79             :   // reset at start of pass
      80             :   void reset    ();
      81             :   
      82             :   // returns the current noise estimate
      83             :   casacore::Float sigma0   ( casacore::uInt ifr,casacore::uInt it );
      84             :   // sets a new noise estimate
      85             :   void  setSigma ( casacore::uInt ifr,casacore::uInt it,casacore::Float level );
      86             :   // marks a noise estimate as updated without changing it
      87             :   void  markSigma ( casacore::uInt ifr );
      88             : 
      89             :   // recompute updated estimates and optionally do row flagging
      90             :   casacore::Float updateSigma (casacore::uInt &ifrmax,casacore::uInt &itmax,casacore::Bool flagrows = true, bool clear_flags = true );
      91             :         
      92             : private:
      93             :   RFChunkStats &chunk;
      94             :   RFFlagCube   &flag;
      95             :   casacore::Float clip_level;
      96             :   casacore::uInt halfwin,maxpass;
      97             :   
      98             :   casacore::uInt nifr,ntime;
      99             :   casacore::Matrix<casacore::Float> sig,sig0;
     100             :   casacore::Vector<casacore::Bool> sigupdated;
     101             :   
     102             :   casacore::LogIO &os;
     103             : };
     104             : 
     105           0 : inline casacore::Float RFRowClipper::sigma0 (casacore::uInt ifr,casacore::uInt it)
     106             : {
     107           0 :   return sig0(it,ifr);
     108             : }
     109             : 
     110           0 : inline void RFRowClipper::setSigma (casacore::uInt ifr,casacore::uInt it,casacore::Float level) 
     111             : {
     112           0 :   sig(it,ifr) = level;
     113           0 :   sigupdated(ifr) = true;
     114           0 : }
     115             : 
     116           0 : inline void RFRowClipper::markSigma (casacore::uInt ifr) 
     117             : {
     118           0 :   sigupdated(ifr) = true;
     119           0 : }
     120             : 
     121             : 
     122             : } //# NAMESPACE CASA - END
     123             : 
     124             : #endif