LCOV - code coverage report
Current view: top level - msvis/MSVis - MSUtil.cc (source / functions) Hit Total Coverage
Test: casa_coverage.info Lines: 337 587 57.4 %
Date: 2023-10-25 08:47:59 Functions: 8 13 61.5 %

          Line data    Source code
       1             : //# MSUtil.cc: Some MS specific Utilities
       2             : //# Copyright (C) 2011
       3             : //# Associated Universities, Inc. Washington DC, USA.
       4             : //#
       5             : //# This library is free software; you can redistribute it and/or modify it
       6             : //# under the terms of the GNU Library General Public License as published by
       7             : //# the Free Software Foundation; either version 2 of the License, or (at your
       8             : //# option) any later version.
       9             : //#
      10             : //# This library is distributed in the hope that it will be useful, but WITHOUT
      11             : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
      12             : //# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
      13             : //# License for more details.
      14             : //#
      15             : //# You should have received a copy of the GNU Library General Public License
      16             : //# along with this library; if not, write to the Free Software Foundation,
      17             : //# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
      18             : //#
      19             : //# Correspondence concerning AIPS++ should be adressed as follows:
      20             : //#        Internet email: aips2-request@nrao.edu.
      21             : //#        Postal address: AIPS++ Project Office
      22             : //#                        National Radio Astronomy Observatory
      23             : //#                        520 Edgemont Road
      24             : //#                        Charlottesville, VA 22903-2475 USA
      25             : //#
      26             : //#
      27             : //# $Id$
      28             : #include <casacore/casa/Utilities/Sort.h>
      29             : #include <casacore/measures/Measures/MeasTable.h>
      30             : #include <casacore/ms/MeasurementSets/MSColumns.h>
      31             : #include <casacore/ms/MSSel/MSSpwIndex.h>
      32             : #include <casacore/ms/MSSel/MSDataDescIndex.h>
      33             : #include <msvis/MSVis/MSUtil.h>
      34             : #include <casacore/casa/Arrays/ArrayMath.h>
      35             : #include <casacore/casa/OS/Path.h>
      36             : #include <casacore/casa/Utilities/GenSort.h>
      37             : #include <iomanip>
      38             : using namespace casacore;
      39             : namespace casa { //# NAMESPACE CASA - BEGIN
      40             : 
      41           0 :   MSUtil::MSUtil(){};
      42           7 :   void MSUtil::getSpwInFreqRange(Vector<Int>& spw, Vector<Int>& start,
      43             :                                   Vector<Int>& nchan,
      44             :                                   const MeasurementSet& ms, 
      45             :                                   const Double freqStart,
      46             :                                   const Double freqEnd,
      47             :                                   const Double freqStep,
      48             :                             const MFrequency::Types freqframe,
      49             :                             const Int fieldId)
      50             :   {
      51           7 :     spw.resize();
      52           7 :     start.resize();
      53           7 :     nchan.resize();
      54          14 :     Vector<Double> t;
      55           7 :     ScalarColumn<Double> (ms,MS::columnName(MS::TIME)).getColumn(t);
      56             :     //Vector<Int> ddId;
      57             :     //Vector<Int> fldId;
      58             :     
      59          14 :     MSFieldColumns fieldCol(ms.field());
      60          14 :     MSDataDescColumns ddCol(ms.dataDescription());
      61          14 :     MSSpWindowColumns spwCol(ms.spectralWindow());
      62          14 :     ROScalarMeasColumn<MEpoch> timeCol(ms, MS::columnName(MS::TIME));
      63          14 :     Vector<uInt>  uniqIndx;
      64           7 :     uInt nTimes=GenSortIndirect<Double>::sort (uniqIndx, t, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
      65             : 
      66           7 :     t.resize(0);
      67             :     //ScalarColumn<Int> (ms,MS::columnName(MS::DATA_DESC_ID)).getColumn(ddId);
      68             :     //ScalarColumn<Int> (ms,MS::columnName(MS::FIELD_ID)).getColumn(fldId);
      69          14 :     ScalarColumn<Int> ddId(ms,MS::columnName(MS::DATA_DESC_ID));
      70          14 :     ScalarColumn<Int> fldId(ms,MS::columnName(MS::FIELD_ID));
      71             :     //now need to do the conversion to data frame from requested frame
      72             :     //Get the epoch mesasures of the first row
      73          14 :     MEpoch ep;
      74           7 :     timeCol.get(0, ep);
      75          14 :     String observatory;
      76          14 :     MPosition obsPos;
      77             :     /////observatory position
      78          14 :     MSColumns msc(ms);
      79           7 :     if (ms.observation().nrow() > 0) {
      80           7 :       observatory = msc.observation().telescopeName()(msc.observationId()(0));
      81             :     }
      82          14 :     if (observatory.length() == 0 || 
      83           7 :         !MeasTable::Observatory(obsPos,observatory)) {
      84             :       // unknown observatory, use first antenna
      85           0 :       obsPos=msc.antenna().positionMeas()(0);
      86             :     }
      87             :     //////
      88           7 :     Int oldDD=ddId(0);
      89           7 :     Int newDD=oldDD;
      90             :     //For now we will assume that the field is not moving very far from polynome 0
      91          14 :     MDirection dir =fieldCol.phaseDirMeas(fieldId);
      92           7 :     MFrequency::Types obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(ddCol.spectralWindowId()(ddId(0))));
      93             :     //cout << "nTimes " << nTimes << endl;
      94             :     //cout << " obsframe " << obsMFreqType << " reqFrame " << freqframe << endl; 
      95          14 :     MeasFrame frame(ep, obsPos, dir);
      96             :     MFrequency::Convert toObs(freqframe,
      97          14 :                               MFrequency::Ref(obsMFreqType, frame));
      98           7 :     Double freqEndMax=freqEnd;
      99           7 :     Double freqStartMin=freqStart;
     100           7 :     if(freqframe != obsMFreqType){
     101           7 :       freqEndMax=0.0;
     102           7 :       freqStartMin=C::dbl_max;
     103             :     }
     104        3367 :     for (uInt j=0; j< nTimes; ++j){
     105        3360 :       if(fldId(uniqIndx[j]) ==fieldId){
     106        3360 :         timeCol.get(uniqIndx[j], ep);
     107        3360 :         newDD=ddId(uniqIndx[j]);
     108        3360 :         if(oldDD != newDD){
     109           0 :           oldDD=newDD;
     110           0 :           if(spwCol.measFreqRef()(ddCol.spectralWindowId()(newDD)) != obsMFreqType){
     111           0 :             obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(ddCol.spectralWindowId()(newDD)));
     112           0 :             toObs.setOut(MFrequency::Ref(obsMFreqType, frame));
     113             :           }
     114             :         }
     115        3360 :         if(obsMFreqType != freqframe){
     116        3360 :           frame.resetEpoch(ep);
     117        3360 :           Double freqTmp=toObs(Quantity(freqStart, "Hz")).get("Hz").getValue();
     118        3360 :           freqStartMin=(freqStartMin > freqTmp) ? freqTmp : freqStartMin;
     119        3360 :           freqTmp=toObs(Quantity(freqEnd, "Hz")).get("Hz").getValue();
     120        3360 :           freqEndMax=(freqEndMax < freqTmp) ? freqTmp : freqEndMax; 
     121             :         }
     122             :       }
     123             :     }
     124             : 
     125             :     //cout << "freqStartMin " << freqStartMin << " freqEndMax " << freqEndMax << endl;
     126          14 :     MSSpwIndex spwIn(ms.spectralWindow());
     127           7 :     spwIn.matchFrequencyRange(freqStartMin-0.5*freqStep, freqEndMax+0.5*freqStep, spw, start, nchan);
     128             : 
     129             : 
     130             :  
     131           7 :   }
     132             : 
     133           0 :     void MSUtil::getSpwInSourceFreqRange(Vector<Int>& spw, Vector<Int>& start,
     134             :                                          Vector<Int>& nchan,
     135             :                                          const MeasurementSet& ms, 
     136             :                                          const Double freqStart,
     137             :                                          const Double freqEnd,
     138             :                                          const Double freqStep,
     139             :                                          const String& ephemtab,
     140             :                                          const Int fieldId)
     141             :   {
     142           0 :     spw.resize();
     143           0 :     start.resize();
     144           0 :     nchan.resize();
     145           0 :     Vector<Double> t;
     146           0 :     ScalarColumn<Double> (ms,MS::columnName(MS::TIME)).getColumn(t);
     147             :     //Vector<Int> ddId;
     148             :     //Vector<Int> fldId;
     149             :     
     150           0 :     MSFieldColumns fieldCol(ms.field());
     151           0 :     MSDataDescColumns ddCol(ms.dataDescription());
     152           0 :     MSSpWindowColumns spwCol(ms.spectralWindow());
     153           0 :     ROScalarMeasColumn<MEpoch> timeCol(ms, MS::columnName(MS::TIME));
     154           0 :     Vector<uInt>  uniqIndx;
     155           0 :     uInt nTimes=GenSortIndirect<Double>::sort (uniqIndx, t, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
     156             : 
     157           0 :     t.resize(0);
     158             :     //ScalarColumn<Int> (ms,MS::columnName(MS::DATA_DESC_ID)).getColumn(ddId);
     159             :     //ScalarColumn<Int> (ms,MS::columnName(MS::FIELD_ID)).getColumn(fldId);
     160           0 :     ScalarColumn<Int> ddId(ms,MS::columnName(MS::DATA_DESC_ID));
     161           0 :     ScalarColumn<Int> fldId(ms,MS::columnName(MS::FIELD_ID));
     162             :     //now need to do the conversion to data frame from requested frame
     163             :     //Get the epoch mesasures of the first row
     164           0 :     MEpoch ep;
     165           0 :     timeCol.get(0, ep);
     166           0 :     String observatory;
     167           0 :     MPosition obsPos;
     168             :     /////observatory position
     169           0 :     MSColumns msc(ms);
     170           0 :     if (ms.observation().nrow() > 0) {
     171           0 :       observatory = msc.observation().telescopeName()(msc.observationId()(0));
     172             :     }
     173           0 :     if (observatory.length() == 0 || 
     174           0 :         !MeasTable::Observatory(obsPos,observatory)) {
     175             :       // unknown observatory, use first antenna
     176           0 :       obsPos=msc.antenna().positionMeas()(0);
     177             :     }
     178             :     //////
     179             :     // Int oldDD=ddId(0); // unused/commented out below in the oldDD!=newDD if
     180             :     // Int newDD=oldDD;   // unused/commented out below in the oldDD!=newDD if
     181             :     //For now we will assume that the field is not moving very far from polynome 0
     182           0 :     MDirection dir =fieldCol.phaseDirMeas(fieldId);
     183           0 :     MFrequency::Types obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(ddCol.spectralWindowId()(ddId(0))));
     184           0 :     if( obsMFreqType != MFrequency::TOPO)
     185           0 :       throw(AipsError("No dealing with non topo data for moving source yet"));
     186             :     //cout << "nTimes " << nTimes << endl;
     187             :     //cout << " obsframe " << obsMFreqType << " reqFrame " << freqframe << endl; 
     188           0 :     MeasFrame frame(ep, obsPos, dir);
     189             :     // MFrequency::Convert toObs(freqframe,MFrequency::Ref(obsMFreqType, frame);
     190           0 :     MDoppler toObs;
     191           0 :     MDoppler toSource;
     192           0 :     setupSourceObsVelSystem(ephemtab, ms, fieldId, toSource, toObs,frame);
     193           0 :     Double  freqEndMax=0.0;
     194           0 :     Double freqStartMin=C::dbl_max;
     195             :     
     196           0 :     for (uInt j=0; j< nTimes; ++j){
     197           0 :       if(fldId(uniqIndx[j]) ==fieldId){
     198           0 :         timeCol.get(uniqIndx[j], ep);
     199             :         // newDD=ddId(uniqIndx[j]);  // unused below
     200             :         /*if(oldDD != newDD){
     201             :           oldDD=newDD;
     202             :           if(spwCol.measFreqRef()(ddCol.spectralWindowId()(newDD)) != obsMFreqType){
     203             :             obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(ddCol.spectralWindowId()(newDD)));
     204             :             toObs.setOut(MFrequency::Ref(obsMFreqType, frame));
     205             :           }
     206             :           }
     207             :         */
     208             :         //if(obsMFreqType != freqframe){
     209           0 :           frame.resetEpoch(ep);
     210           0 :           Vector<Double> freqTmp(2);
     211           0 :           freqTmp[0]=freqStart;
     212           0 :           freqTmp[1]=freqEnd;
     213           0 :           Vector<Double> newFreqs=toObs.shiftFrequency(freqTmp);
     214             :           //Double freqTmp=toObs(Quantity(freqStart, "Hz")).get("Hz").getValue();
     215           0 :           freqStartMin=(freqStartMin > newFreqs[0]) ? newFreqs[0] : freqStartMin;
     216             :           //freqTmp=toObs(Quantity(freqEnd, "Hz")).get("Hz").getValue();
     217           0 :           freqEndMax=(freqEndMax < newFreqs[1]) ? newFreqs[1] : freqEndMax; 
     218             :           //}
     219             :       }
     220             :     }
     221             : 
     222             :     //cout << "freqStartMin " << freqStartMin << " freqEndMax " << freqEndMax << endl;
     223           0 :     MSSpwIndex spwIn(ms.spectralWindow());
     224           0 :     spwIn.matchFrequencyRange(freqStartMin-0.5*freqStep, freqEndMax+0.5*freqStep, spw, start, nchan);
     225             : 
     226             : 
     227             :  
     228           0 :   }
     229           0 :   void MSUtil:: setupSourceObsVelSystem(const String& ephemTable, const MeasurementSet& ms,   const Int& fieldid, MDoppler& toSource, MDoppler& toObs, MeasFrame& mFrame){
     230           0 :     String ephemtab("");
     231           0 :     const MSColumns mscol(ms);
     232           0 :     if(Table::isReadable(ephemTable)){
     233           0 :       ephemtab=ephemTable;
     234             :     }
     235           0 :     else if(ephemTable=="TRACKFIELD"){
     236           0 :       ephemtab=(mscol.field()).ephemPath(fieldid);
     237             :       
     238             :     }
     239           0 :     MRadialVelocity::Types refvel=MRadialVelocity::GEO;
     240           0 :     MEpoch ep(mFrame.epoch());
     241           0 :     if(ephemtab != ""){
     242             : 
     243           0 :       MeasComet mcomet(Path(ephemtab).absoluteName());
     244           0 :       if(mFrame.comet())
     245           0 :         mFrame.resetComet(mcomet);
     246             :       else
     247           0 :         mFrame.set(mcomet);
     248           0 :       if(mcomet.getTopo().getLength("km").getValue() > 1.0e-3){
     249           0 :         refvel=MRadialVelocity::TOPO;
     250             :       }
     251             :       ////Will use UT for now for ephem tables as it is not clear that they are being
     252             :       ///filled with TDB as intended in MeasComet.h
     253           0 :       MEpoch::Convert toUT(ep, MEpoch::UT);
     254           0 :       MVRadialVelocity cometvel;
     255           0 :       mcomet.getRadVel(cometvel, toUT(ep).get("d").getValue());
     256           0 :       MRadialVelocity::Convert obsvelconv(MRadialVelocity(MVRadialVelocity(0.0),
     257           0 :                                                           MRadialVelocity::Ref(MRadialVelocity::TOPO, mFrame)),  MRadialVelocity::Ref(refvel));
     258           0 :       toSource=MDoppler(Quantity(-cometvel.get("km/s").getValue("km/s")+obsvelconv().get("km/s").getValue("km/s") , "km/s"), MDoppler::RELATIVISTIC);
     259           0 :       toObs=MDoppler(Quantity(cometvel.get("km/s").getValue("km/s")-obsvelconv().get("km/s").getValue("km/s") , "km/s"), MDoppler::RELATIVISTIC);
     260             :       
     261             :                                           
     262             :     }
     263             :     else{//Must be a DE-200 canned source that measures know
     264           0 :       ephemtab=upcase(ephemTable);
     265           0 :       MeasTable::Types mtype=MeasTable::BARYEARTH;
     266             :       MDirection::Types planettype;
     267           0 :       if(!MDirection::getType(planettype, ephemtab))
     268           0 :         throw(AipsError("Did not understand sourcename as a known solar system object"));
     269           0 :       switch(planettype){
     270           0 :       case MDirection::MERCURY :
     271           0 :         mtype=MeasTable::MERCURY;
     272           0 :         break;
     273           0 :       case MDirection::VENUS :
     274           0 :         mtype=MeasTable::VENUS;
     275           0 :         break;  
     276           0 :       case MDirection::MARS :
     277           0 :         mtype=MeasTable::MARS;
     278           0 :         break;
     279           0 :       case MDirection::JUPITER :
     280           0 :         mtype=MeasTable::JUPITER;
     281           0 :         break;
     282           0 :       case MDirection::SATURN :
     283           0 :         mtype=MeasTable::SATURN;
     284           0 :         break;
     285           0 :       case MDirection::URANUS :
     286           0 :         mtype=MeasTable::URANUS;
     287           0 :         break;
     288           0 :       case MDirection::NEPTUNE :
     289           0 :         mtype=MeasTable::NEPTUNE;
     290           0 :         break;
     291           0 :       case MDirection::PLUTO :
     292           0 :         mtype=MeasTable::PLUTO;
     293           0 :         break;
     294           0 :       case MDirection::MOON :
     295           0 :         mtype=MeasTable::MOON;
     296           0 :         break;
     297           0 :       case MDirection::SUN :
     298           0 :         mtype=MeasTable::SUN;
     299           0 :         break;
     300           0 :       default:
     301           0 :         throw(AipsError("Cannot translate to known major solar system object"));
     302             :       }
     303             : 
     304           0 :       Vector<Double> planetparam;
     305           0 :        Vector<Double> earthparam;
     306           0 :        MEpoch::Convert toTDB(ep, MEpoch::TDB);
     307           0 :        earthparam=MeasTable::Planetary(MeasTable::EARTH, toTDB(ep).get("d").getValue());
     308           0 :        planetparam=MeasTable::Planetary(mtype, toTDB(ep).get("d").getValue());
     309             :        //GEOcentric param
     310           0 :        planetparam=planetparam-earthparam;
     311           0 :        Vector<Double> unitdirvec(3);
     312           0 :        Double dist=sqrt(planetparam(0)*planetparam(0)+planetparam(1)*planetparam(1)+planetparam(2)*planetparam(2));
     313           0 :        unitdirvec(0)=planetparam(0)/dist;
     314           0 :        unitdirvec(1)=planetparam(1)/dist;
     315           0 :        unitdirvec(2)=planetparam(2)/dist;
     316           0 :        MRadialVelocity::Convert obsvelconv(MRadialVelocity(MVRadialVelocity(0.0),
     317           0 :                                                           MRadialVelocity::Ref(MRadialVelocity::TOPO, mFrame)),  MRadialVelocity::Ref(refvel));
     318           0 :        Quantity planetradvel(planetparam(3)*unitdirvec(0)+planetparam(4)*unitdirvec(1)+planetparam(5)*unitdirvec(2), "AU/d");
     319           0 :         toSource=MDoppler(Quantity(-planetradvel.getValue("km/s")+obsvelconv().get("km/s").getValue("km/s") , "km/s"), MDoppler::RELATIVISTIC);
     320           0 :         toObs=MDoppler(Quantity(planetradvel.getValue("km/s")-obsvelconv().get("km/s").getValue("km/s") , "km/s"), MDoppler::RELATIVISTIC);
     321             :     }
     322           0 :   }
     323             : 
     324             :   
     325           0 :   void MSUtil::getSpwInFreqRangeAllFields(Vector<Int>& outspw, Vector<Int>& outstart,
     326             :                           Vector<Int>& outnchan,
     327             :                           const MeasurementSet& ms,
     328             :                           const Double freqStart,
     329             :                           const Double freqEnd,
     330             :                           const Double freqStep,
     331             :                           const MFrequency::Types freqframe){
     332           0 :           Vector<Int> fldId;
     333           0 :           ScalarColumn<Int> (ms, MS::columnName (MS::FIELD_ID)).getColumn (fldId);
     334           0 :           const Int option = Sort::HeapSort | Sort::NoDuplicates;
     335           0 :           const Sort::Order order = Sort::Ascending;
     336             : 
     337           0 :           Int nfields = GenSort<Int>::sort (fldId, order, option);
     338             : 
     339           0 :           fldId.resize(nfields, true);
     340           0 :           outspw.resize();
     341           0 :           outstart.resize();
     342           0 :           outnchan.resize();
     343           0 :           for (Int k=0; k < nfields; ++k){
     344           0 :                   Vector<Int> locspw, locstart, locnchan;
     345           0 :                   MSUtil::getSpwInFreqRange(locspw, locstart, locnchan, ms, freqStart, freqEnd, freqStep, freqframe, fldId[k]);
     346           0 :                   for (Int j=0; j< locspw.shape()(0); ++j ){
     347           0 :                           Bool hasthisspw=false;
     348           0 :                           for (Int i=0; i< outspw.shape()(0); ++i){
     349           0 :                                   if(outspw[i]==locspw[j]){
     350           0 :                                           hasthisspw=true;
     351           0 :                                           if(locstart[j] < outstart[i]){
     352           0 :                                                   Int endchan=outstart[i]+outnchan[i]-1;
     353           0 :                                                   outstart[i]=locstart[j];
     354           0 :                                                   if(endchan < (locstart[j]+ locnchan[j]-1))
     355           0 :                                                           endchan=locstart[j]+ locnchan[j]-1;
     356           0 :                                                   outnchan[i]=endchan+outstart[i]+1;
     357             :                                           }
     358             :                                   }
     359             :                           }
     360           0 :                           if(!hasthisspw){
     361           0 :                             uInt nout=outspw.nelements();
     362           0 :                                   outspw.resize(nout+1, true);
     363           0 :                                   outnchan.resize(nout+1, true);
     364           0 :                                   outstart.resize(nout+1, true);
     365           0 :                                   outspw[nout]=locspw[j];
     366           0 :                                   outstart[nout]=locstart[j];
     367           0 :                                   outnchan[nout]=locnchan[j];
     368             :                                  
     369             : 
     370             : 
     371             :                           }
     372             :                   }
     373             : 
     374             :           }
     375             : 
     376             : 
     377           0 :   }
     378          17 :   void MSUtil::getChannelRangeFromFreqRange(Int& start,
     379             :                                   Int& nchan,
     380             :                                   const MeasurementSet& ms,
     381             :                                   const Int spw,
     382             :                                   const Double freqStart,
     383             :                                   const Double freqEnd,
     384             :                                   const Double freqStep,
     385             :                             const MFrequency::Types freqframe)
     386             :   {
     387          17 :     start=-1;
     388          17 :     nchan=-1;
     389          17 :     MSFieldColumns fieldCol(ms.field());
     390          17 :     MSDataDescColumns ddCol(ms.dataDescription());
     391          17 :         Vector<Int> dataDescSel=MSDataDescIndex(ms.dataDescription()).matchSpwId(spw);
     392             :         //cerr << "dataDescSel " << dataDescSel << endl;
     393          17 :         if(dataDescSel.nelements()==0)
     394           0 :                 return;
     395          17 :         Vector<Double> t;
     396          17 :     ScalarColumn<Double> (ms,MS::columnName(MS::TIME)).getColumn(t);
     397          17 :         Vector<Int> ddId;
     398          17 :     ScalarColumn<Int> (ms,MS::columnName(MS::DATA_DESC_ID)).getColumn(ddId);
     399          17 :     MSSpWindowColumns spwCol(ms.spectralWindow());
     400          17 :     Vector<Double> ddIdD(ddId.shape());
     401          17 :     convertArray(ddIdD, ddId);
     402          17 :     ddIdD+= 1.0; //no zero id
     403             :      //we have to do this as one can have multiple dd for the same time. 
     404          17 :     t*=ddIdD;
     405             :     //t(fldId != fieldId)=-1.0;
     406          17 :     Vector<Double> elt;
     407          17 :     Vector<Int> elindx;
     408             :     //rejecting the large blocks of same time for all baselines
     409             :     //this speeds up by a lot GenSort::sort
     410          17 :     rejectConsecutive(t, elt, elindx);
     411             :     
     412          17 :     ROScalarMeasColumn<MEpoch> timeCol(ms, MS::columnName(MS::TIME));
     413          17 :     Vector<uInt>  uniqIndx;
     414          17 :     uInt nTimes=GenSortIndirect<Double>::sort (uniqIndx, elt, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
     415             : 
     416          17 :     t.resize(0);
     417             :     
     418             :     //ScalarColumn<Int> ddId(ms,MS::columnName(MS::DATA_DESC_ID));
     419          17 :     ScalarColumn<Int> fldId(ms,MS::columnName(MS::FIELD_ID));
     420             :     //now need to do the conversion to data frame from requested frame
     421             :     //Get the epoch mesasures of the first row
     422          17 :     MEpoch ep;
     423          17 :     timeCol.get(0, ep);
     424          17 :     String observatory;
     425          17 :     MPosition obsPos;
     426             :     /////observatory position
     427          17 :     MSColumns msc(ms);
     428          17 :     if (ms.observation().nrow() > 0) {
     429          17 :       observatory = msc.observation().telescopeName()(msc.observationId()(0));
     430             :     }
     431          34 :     if (observatory.length() == 0 || 
     432          17 :         !MeasTable::Observatory(obsPos,observatory)) {
     433             :       // unknown observatory, use first antenna
     434           0 :       obsPos=msc.antenna().positionMeas()(0);
     435             :     }
     436             :     //////
     437          17 :     Int oldDD=dataDescSel(0);
     438          17 :     Int newDD=oldDD;
     439             :     //For now we will assume that the field is not moving very far from polynome 0
     440          17 :     MDirection dir =fieldCol.phaseDirMeas(0);
     441          17 :     MFrequency::Types obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(ddCol.spectralWindowId()(dataDescSel(0))));
     442          17 :     MeasFrame frame(ep, obsPos, dir);
     443             :     MFrequency::Convert toObs(freqframe,
     444          17 :                               MFrequency::Ref(obsMFreqType, frame));
     445          17 :     Double freqEndMax=freqEnd+0.5*fabs(freqStep);
     446          17 :     Double freqStartMin=freqStart-0.5*fabs(freqStep);
     447          17 :     if(freqframe != obsMFreqType){
     448          17 :       freqEndMax=0.0;
     449          17 :       freqStartMin=C::dbl_max;
     450             :     }
     451        8177 :     for (uInt j=0; j< nTimes; ++j) {
     452        8160 :         if(anyEQ(dataDescSel, ddId(elindx[uniqIndx[j]]))){
     453        8160 :             timeCol.get(elindx[uniqIndx[j]], ep);
     454        8160 :             newDD=ddId(elindx[uniqIndx[j]]);
     455        8160 :             if(oldDD != newDD) {
     456             :                                 
     457           0 :                 oldDD=newDD;
     458           0 :                 if(spwCol.measFreqRef()(ddCol.spectralWindowId()(newDD)) != obsMFreqType) {
     459           0 :                     obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(ddCol.spectralWindowId()(newDD)));
     460           0 :                     toObs.setOut(MFrequency::Ref(obsMFreqType, frame));
     461             :                 }
     462             :             }
     463        8160 :             if(obsMFreqType != freqframe) {
     464        8160 :                 dir=fieldCol.phaseDirMeas(fldId(elindx[uniqIndx[j]]));
     465        8160 :                 frame.resetEpoch(ep);
     466        8160 :                 frame.resetDirection(dir);
     467        8160 :                 Double freqTmp=toObs(Quantity(freqStart, "Hz")).get("Hz").getValue();
     468        8160 :                 freqStartMin=(freqStartMin > freqTmp) ? freqTmp : freqStartMin;
     469        8160 :                 freqTmp=toObs(Quantity(freqEnd, "Hz")).get("Hz").getValue();
     470        8160 :                 freqEndMax=(freqEndMax < freqTmp) ? freqTmp : freqEndMax;
     471             :             }
     472             :         }
     473             :     }
     474             : 
     475             :     
     476          17 :     MSSpwIndex spwIn(ms.spectralWindow());
     477          17 :         Vector<Int> spws;
     478          17 :         Vector<Int> starts;
     479          17 :         Vector<Int> nchans;
     480          17 :     if(!spwIn.matchFrequencyRange(freqStartMin-0.5*freqStep, freqEndMax+0.5*freqStep, spws, starts, nchans)){
     481           0 :                         return;
     482             :         }
     483          34 :         for (uInt k=0; k < spws.nelements(); ++k){
     484          17 :                         if(spws[k]==spw){
     485          17 :                                         start=starts[k];
     486          17 :                                         nchan=nchans[k];
     487             :                         }
     488             :         
     489             :         }
     490             :   }
     491         153 :   Bool MSUtil::getFreqRangeInSpw( Double& freqStart,
     492             :                                   Double& freqEnd, const Vector<Int>& spw, const Vector<Int>& start,
     493             :                                   const Vector<Int>& nchan,
     494             :                                   const MeasurementSet& ms, 
     495             :                                   const MFrequency::Types freqframe,
     496             :                                   const Int fieldId, const Bool fromEdge){
     497         306 :     Vector<Int> fields(1, fieldId);
     498         153 :     return MSUtil::getFreqRangeInSpw( freqStart, freqEnd, spw, start,
     499         306 :                                       nchan,ms, freqframe,fields, fromEdge);
     500             : 
     501             : 
     502             :   }
     503        1789 :   Bool MSUtil::getFreqRangeInSpw( Double& freqStart,
     504             :                                   Double& freqEnd, const Vector<Int>& spw, const Vector<Int>& start,
     505             :                                   const Vector<Int>& nchan,
     506             :                                   const MeasurementSet& ms, 
     507             :                                   const MFrequency::Types freqframe,
     508             :                                   const Bool fromEdge){
     509        3578 :     Vector<Int> fields(0);
     510        1789 :     return MSUtil::getFreqRangeInSpw( freqStart, freqEnd, spw, start,
     511        3578 :                                       nchan,ms, freqframe,fields, fromEdge, True);
     512             : 
     513             : 
     514             :   }
     515        4191 :   Bool MSUtil::getFreqRangeInSpw( Double& freqStart,
     516             :                                   Double& freqEnd, const Vector<Int>& spw, const Vector<Int>& start,
     517             :                                   const Vector<Int>& nchan,
     518             :                                   const MeasurementSet& ms, 
     519             :                                   const MFrequency::Types freqframe,
     520             :                                   const Vector<Int>&  fieldIds, const Bool fromEdge, const Bool useFieldsInMS){
     521             :     
     522        4191 :     Bool retval=False;
     523        4191 :     freqStart=C::dbl_max;
     524        4191 :     freqEnd=0.0;
     525        8382 :     Vector<Double> t;
     526        4191 :     ScalarColumn<Double> (ms,MS::columnName(MS::TIME)).getColumn(t);
     527        8382 :     Vector<Int> ddId;
     528        8382 :     Vector<Int> fldId;
     529        4191 :     ScalarColumn<Int> (ms,MS::columnName(MS::DATA_DESC_ID)).getColumn(ddId);
     530        4191 :     ScalarColumn<Int> (ms,MS::columnName(MS::FIELD_ID)).getColumn(fldId);
     531        8382 :     MSFieldColumns fieldCol(ms.field());
     532        8382 :     MSDataDescColumns ddCol(ms.dataDescription());
     533        8382 :     MSSpWindowColumns spwCol(ms.spectralWindow());
     534        8382 :     ROScalarMeasColumn<MEpoch> timeCol(ms, MS::columnName(MS::TIME));
     535        8382 :     Vector<Double> ddIdD(ddId.shape());
     536        4191 :     convertArray(ddIdD, ddId);
     537        4191 :     ddIdD+= 1.0; //no zero id
     538             :     //we have to do this as one can have multiple dd for the same time. 
     539        4191 :     t*=ddIdD;
     540             :     //t(fldId != fieldId)=-1.0;
     541        8382 :     Vector<Double> elt;
     542        8382 :     Vector<Int> elindx;
     543             :     //rejecting the large blocks of same time for all baselines
     544             :     //this speeds up by a lot GenSort::sort
     545        4191 :     rejectConsecutive(t, elt, elindx);
     546        8382 :     Vector<uInt>  uniqIndx;
     547             :     
     548        4191 :     uInt nTimes=GenSortIndirect<Double>::sort (uniqIndx, elt, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
     549             :     
     550        8382 :     MDirection dir;
     551        4191 :     if(useFieldsInMS)
     552        1789 :       dir=fieldCol.phaseDirMeas(fldId[0]);
     553             :     else
     554        2402 :       dir=fieldCol.phaseDirMeas(fieldIds[0]);
     555        8382 :     MSDataDescIndex mddin(ms.dataDescription());
     556        4191 :     MFrequency::Types obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(0));
     557        8382 :     MEpoch ep;
     558        4191 :     timeCol.get(0, ep);
     559        8382 :     String observatory;
     560        8382 :     MPosition obsPos;
     561             :     /////observatory position
     562        8382 :     MSColumns msc(ms);
     563        4191 :     if (ms.observation().nrow() > 0) {
     564        4191 :       observatory = msc.observation().telescopeName()(msc.observationId()(0));
     565             :     }
     566        8382 :     if (observatory.length() == 0 || 
     567        4191 :         !MeasTable::Observatory(obsPos,observatory)) {
     568             :       // unknown observatory, use first antenna
     569           0 :       obsPos=msc.antenna().positionMeas()(0);
     570             :     }
     571             :     //////
     572        4191 :     MeasFrame frame(ep, obsPos, dir);
     573             :     
     574             :                                                 
     575        8947 :     for (uInt ispw =0 ; ispw < spw.nelements() ; ++ispw){
     576        4756 :                 if(nchan[ispw]>0 && start[ispw] >-1){
     577        4756 :       Double freqStartObs=C::dbl_max;
     578        4756 :       Double freqEndObs=0.0;
     579        9512 :       Vector<Double> chanfreq=spwCol.chanFreq()(spw[ispw]);
     580        9512 :       Vector<Double> chanwid=spwCol.chanWidth()(spw[ispw]);
     581        9512 :       Vector<Int> ddOfSpw=mddin.matchSpwId(spw[ispw]);
     582      175997 :       for (Int ichan=start[ispw]; ichan<start[ispw]+nchan[ispw]; ++ichan){ 
     583      171241 :                   if(fromEdge){
     584      107504 :                         if(freqStartObs > (chanfreq[ichan]-fabs(chanwid[ichan])/2.0)) freqStartObs=chanfreq[ichan]-fabs(chanwid[ichan])/2.0;
     585      107504 :                         if(freqEndObs < (chanfreq[ichan]+fabs(chanwid[ichan])/2.0)) freqEndObs=chanfreq[ichan]+fabs(chanwid[ichan])/2.0;   
     586             :                   }
     587             :                   else{
     588       63737 :                         if(freqStartObs > (chanfreq[ichan])) freqStartObs=chanfreq[ichan];
     589       63737 :                         if(freqEndObs < (chanfreq[ichan])) freqEndObs=chanfreq[ichan];   
     590             :                   }
     591             :       }
     592        4756 :       obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(spw[ispw]));
     593        4756 :       if((obsMFreqType==MFrequency::REST) || (obsMFreqType==freqframe && obsMFreqType != MFrequency::TOPO)){
     594         591 :         if(freqStart > freqStartObs)  freqStart=freqStartObs;
     595         591 :         if(freqEnd < freqStartObs)  freqEnd=freqStartObs;
     596         591 :         if(freqStart > freqEndObs)  freqStart=freqEndObs;
     597         591 :         if(freqEnd < freqEndObs)  freqEnd=freqEndObs;
     598         591 :         retval=True;
     599             :       }
     600             :       else{
     601             :         MFrequency::Convert toframe(obsMFreqType,
     602        8330 :                                     MFrequency::Ref(freqframe, frame));
     603     1060551 :         for (uInt j=0; j< nTimes; ++j){
     604     1056386 :           if((useFieldsInMS || anyEQ(fieldIds, fldId[elindx[uniqIndx[j]]])) && anyEQ(ddOfSpw, ddId[elindx[uniqIndx[j]]])){
     605      924163 :             timeCol.get(elindx[uniqIndx[j]], ep);
     606      924163 :             dir=fieldCol.phaseDirMeas(fldId[elindx[uniqIndx[j]]]);
     607      924163 :             frame.resetEpoch(ep);
     608      924163 :             frame.resetDirection(dir);
     609      924163 :             Double freqTmp=toframe(Quantity(freqStartObs, "Hz")).get("Hz").getValue();
     610      924163 :             if(freqStart > freqTmp)  freqStart=freqTmp;
     611      924163 :             if(freqEnd < freqTmp)  freqEnd=freqTmp;
     612      924163 :             freqTmp=toframe(Quantity(freqEndObs, "Hz")).get("Hz").getValue();
     613      924163 :             if(freqStart > freqTmp)  freqStart=freqTmp;
     614      924163 :             if(freqEnd < freqTmp)  freqEnd=freqTmp;
     615      924163 :             retval=True;
     616             :           }
     617             :         }
     618             :       }
     619             :                 }
     620             :     }
     621        8382 :     return retval;
     622             :   }
     623             : 
     624             : 
     625           3 :   Bool MSUtil::getFreqRangeAndRefFreqShift( Double& freqStart,
     626             :                                             Double& freqEnd, Quantity& sysvel, const MEpoch& refEp, const Vector<Int>& spw, const Vector<Int>& start,
     627             :                                   const Vector<Int>& nchan,
     628             :                                   const MeasurementSet& ms, 
     629             :                                   const String& ephemPath,   const MDirection& trackDir, 
     630             :                                   const Bool fromEdge){
     631             : 
     632           3 :     casacore::MDirection::Types planetType=MDirection::castType(trackDir.getRef().getType());
     633           3 :     if( (! Table::isReadable(ephemPath)) &&   ( (planetType <= MDirection::N_Types) || (planetType >= MDirection::COMET)))
     634           0 :       throw(AipsError("getFreqRange in SOURCE frame has to have a valid ephemeris table or major solar system object defined"));
     635           3 :     Bool isephem=False;
     636           6 :     MeasComet mcomet;
     637           3 :     MeasTable::Types mtype=MeasTable::BARYEARTH;
     638           3 :     if(Table::isReadable(ephemPath)){
     639           3 :       mcomet=MeasComet(Path(ephemPath).absoluteName());
     640           3 :       isephem=True;
     641             :     }
     642             :     else{
     643             :       
     644           0 :       if(planetType >=MDirection::MERCURY && planetType < MDirection::COMET){
     645             :         //Damn these enums are not in the same order
     646           0 :         switch(planetType){
     647           0 :         case MDirection::MERCURY :
     648           0 :           mtype=MeasTable::MERCURY;
     649           0 :           break;
     650           0 :         case MDirection::VENUS :
     651           0 :           mtype=MeasTable::VENUS;
     652           0 :           break;        
     653           0 :         case MDirection::MARS :
     654           0 :           mtype=MeasTable::MARS;
     655           0 :           break;
     656           0 :         case MDirection::JUPITER :
     657           0 :           mtype=MeasTable::JUPITER;
     658           0 :           break;
     659           0 :         case MDirection::SATURN :
     660           0 :           mtype=MeasTable::SATURN;
     661           0 :           break;
     662           0 :         case MDirection::URANUS :
     663           0 :           mtype=MeasTable::URANUS;
     664           0 :           break;
     665           0 :         case MDirection::NEPTUNE :
     666           0 :           mtype=MeasTable::NEPTUNE;
     667           0 :           break;
     668           0 :         case MDirection::PLUTO :
     669           0 :           mtype=MeasTable::PLUTO;
     670           0 :           break;
     671           0 :         case MDirection::MOON :
     672           0 :           mtype=MeasTable::MOON;
     673           0 :           break;
     674           0 :         case MDirection::SUN :
     675           0 :           mtype=MeasTable::SUN;
     676           0 :           break;
     677           0 :         default:
     678           0 :           throw(AipsError("Cannot translate to known major solar system object"));
     679             :         }
     680             :       }
     681             : 
     682             :     }
     683             : 
     684             : 
     685           6 :     Vector<Double> planetparam;
     686           6 :     Vector<Double> earthparam;
     687             :     
     688             : 
     689             :   
     690             : 
     691             : 
     692             :     
     693           3 :     Bool retval=False;
     694           3 :     freqStart=C::dbl_max;
     695           3 :     freqEnd=0.0;
     696           6 :     Vector<Double> t;
     697           3 :     ScalarColumn<Double> (ms,MS::columnName(MS::TIME)).getColumn(t);
     698           6 :     Vector<Int> ddId;
     699           6 :     Vector<Int> fldId;
     700           3 :     ScalarColumn<Int> (ms,MS::columnName(MS::DATA_DESC_ID)).getColumn(ddId);
     701           3 :     ScalarColumn<Int> (ms,MS::columnName(MS::FIELD_ID)).getColumn(fldId);
     702           6 :     MSFieldColumns fieldCol(ms.field());
     703           6 :     MSDataDescColumns ddCol(ms.dataDescription());
     704           6 :     MSSpWindowColumns spwCol(ms.spectralWindow());
     705           6 :     ROScalarMeasColumn<MEpoch> timeCol(ms, MS::columnName(MS::TIME));
     706           6 :     Vector<Double> ddIdD(ddId.shape());
     707           3 :     convertArray(ddIdD, ddId);
     708           3 :     ddIdD+= 1.0; //no zero id
     709             :     //we have to do this as one can have multiple dd for the same time. 
     710           3 :     t*=ddIdD;
     711             :     //t(fldId != fieldId)=-1.0;
     712           6 :     Vector<Double> elt;
     713           6 :     Vector<Int> elindx;
     714             :     //rejecting the large blocks of same time for all baselines
     715             :     //this speeds up by a lot GenSort::sort
     716           3 :     rejectConsecutive(t, elt, elindx);
     717           6 :     Vector<uInt>  uniqIndx;
     718             :     
     719           3 :     uInt nTimes=GenSortIndirect<Double>::sort (uniqIndx, elt, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
     720             :     
     721           6 :     MDirection dir;
     722           3 :     dir=fieldCol.phaseDirMeas(fldId[0]);
     723           6 :     MSDataDescIndex mddin(ms.dataDescription());
     724           6 :     MEpoch ep;
     725           3 :     timeCol.get(0, ep);
     726           6 :     String observatory;
     727           6 :     MPosition obsPos;
     728             :     /////observatory position
     729           6 :     MSColumns msc(ms);
     730           3 :     if (ms.observation().nrow() > 0) {
     731           3 :       observatory = msc.observation().telescopeName()(msc.observationId()(0));
     732             :     }
     733           6 :     if (observatory.length() == 0 || 
     734           3 :         !MeasTable::Observatory(obsPos,observatory)) {
     735             :       // unknown observatory, use first antenna
     736           0 :       obsPos=msc.antenna().positionMeas()(0);
     737             :     }
     738             :     //////
     739             :     //cerr << "obspos " << obsPos << endl;
     740           6 :     MeasFrame mframe(ep, obsPos, dir);
     741             :     ////Will use UT for now for ephem tables as it is not clear that they are being
     742             :     ///filled with TDB as intended in MeasComet.h 
     743           6 :     MEpoch::Convert toUT(ep, MEpoch::UT);
     744           6 :     MEpoch::Convert toTDB(ep, MEpoch::TDB);
     745           3 :     MRadialVelocity::Types refvel=MRadialVelocity::GEO;
     746           3 :     if(isephem){
     747             :       //cerr << "dist " << mcomet.getTopo().getLength("km") << endl;
     748           3 :       if(mcomet.getTopo().getLength("km").getValue() > 1.0e-3){
     749           0 :         refvel=MRadialVelocity::TOPO;
     750             :       }
     751             :     }
     752           6 :     MRadialVelocity::Convert obsvelconv (MRadialVelocity(MVRadialVelocity(0.0),
     753           6 :                                                MRadialVelocity::Ref(MRadialVelocity::TOPO, mframe)),
     754           9 :                                          MRadialVelocity::Ref(refvel));
     755           3 :     MVRadialVelocity cometvel;
     756             :     
     757           6 :     for (uInt ispw =0 ; ispw < spw.nelements() ; ++ispw){
     758           3 :       if(nchan[ispw]>0 && start[ispw] >-1){
     759           3 :         Double freqStartObs=C::dbl_max;
     760           3 :         Double freqEndObs=0.0;
     761           6 :         Vector<Double> chanfreq=spwCol.chanFreq()(spw[ispw]);
     762           6 :         Vector<Double> chanwid=spwCol.chanWidth()(spw[ispw]);
     763           6 :         Vector<Int> ddOfSpw=mddin.matchSpwId(spw[ispw]);
     764           6 :         for (Int ichan=start[ispw]; ichan<start[ispw]+nchan[ispw]; ++ichan){ 
     765           3 :           if(fromEdge){
     766           3 :             if(freqStartObs > (chanfreq[ichan]-fabs(chanwid[ichan])/2.0)) freqStartObs=chanfreq[ichan]-fabs(chanwid[ichan])/2.0;
     767           3 :             if(freqEndObs < (chanfreq[ichan]+fabs(chanwid[ichan])/2.0)) freqEndObs=chanfreq[ichan]+fabs(chanwid[ichan])/2.0;   
     768             :           }
     769             :           else{
     770           0 :             if(freqStartObs > (chanfreq[ichan])) freqStartObs=chanfreq[ichan];
     771           0 :             if(freqEndObs < (chanfreq[ichan])) freqEndObs=chanfreq[ichan];   
     772             :           }
     773             :         }
     774             :       
     775           3 :       MFrequency::Types obsMFreqType= (MFrequency::Types) (spwCol.measFreqRef()(spw[ispw]));
     776           3 :       if(obsMFreqType==MFrequency::REST)
     777           0 :         throw(AipsError("cannot do Source frame conversion from REST"));
     778             :       MFrequency::Convert toTOPO(obsMFreqType,
     779           6 :                                  MFrequency::Ref(MFrequency::TOPO, mframe));
     780           3 :       Double diffepoch=1e37;
     781           3 :       sysvel=Quantity(0.0,"m/s");
     782             :         
     783        1620 :       for (uInt j=0; j< nTimes; ++j){
     784        1617 :           if(anyEQ(ddOfSpw, ddId[elindx[uniqIndx[j]]])){
     785        1617 :             timeCol.get(elindx[uniqIndx[j]], ep);
     786        1617 :             dir=fieldCol.phaseDirMeas(fldId[elindx[uniqIndx[j]]], ep.get("s").getValue());
     787        1617 :             mframe.resetEpoch(ep);
     788        1617 :             mframe.resetDirection(dir);
     789        1617 :             if(obsMFreqType != MFrequency::TOPO){
     790           0 :               freqStartObs=toTOPO(Quantity(freqStartObs, "Hz")).get("Hz").getValue();
     791           0 :               freqEndObs=toTOPO(Quantity(freqEndObs, "Hz")).get("Hz").getValue();
     792             :             }
     793        3234 :             MDoppler mdop;
     794        1617 :             if(isephem){
     795        1617 :               mcomet.getRadVel(cometvel, toUT(ep).get("d").getValue());
     796        1617 :               mdop=MDoppler(Quantity(-cometvel.get("km/s").getValue("km/s")+obsvelconv().get("km/s").getValue("km/s") , "km/s"), MDoppler::RELATIVISTIC);
     797             :               //              cerr << std::setprecision(10) <<  toUT(ep).get("d").getValue() << " fieldid " << fldId[elindx[uniqIndx[j]]] << " cometvel " << cometvel.get("km/s").getValue("km/s") << " obsvel " << obsvelconv().get("km/s").getValue("km/s") << endl;
     798             :             }
     799             :             else{
     800           0 :               earthparam=MeasTable::Planetary(MeasTable::EARTH, toTDB(ep).get("d").getValue());
     801           0 :               planetparam=MeasTable::Planetary(mtype, toTDB(ep).get("d").getValue());
     802             :               //GEOcentric param
     803           0 :               planetparam=planetparam-earthparam;
     804           0 :               Vector<Double> unitdirvec(3);
     805           0 :               Double dist=sqrt(planetparam(0)*planetparam(0)+planetparam(1)*planetparam(1)+planetparam(2)*planetparam(2));
     806           0 :               unitdirvec(0)=planetparam(0)/dist;
     807           0 :               unitdirvec(1)=planetparam(1)/dist;
     808           0 :               unitdirvec(2)=planetparam(2)/dist;
     809           0 :               Quantity planetradvel(planetparam(3)*unitdirvec(0)+planetparam(4)*unitdirvec(1)+planetparam(5)*unitdirvec(2), "AU/d");
     810           0 :               mdop=MDoppler(Quantity(-planetradvel.getValue("km/s")+obsvelconv().get("km/s").getValue("km/s") , "km/s"), MDoppler::RELATIVISTIC);
     811             : 
     812             :             }
     813        1617 :             Vector<Double> range(2); range(0)=freqStartObs; range(1)=freqEndObs;
     814        1617 :             range=mdop.shiftFrequency(range);
     815        1617 :             if(diffepoch > fabs(ep.get("s").getValue("s")-refEp.get("s").getValue("s"))){
     816           3 :               diffepoch= fabs(ep.get("s").getValue("s")-refEp.get("s").getValue("s"));
     817           3 :               sysvel=mdop.get("km/s");
     818             :               //cerr << std::setprecision(10) << "shifts " << range(0)-freqStartObs << "   " <<  range(1)-freqEndObs << endl;
     819             :             }
     820             :               
     821             :             
     822        1617 :             if(freqStart > range[0])  freqStart=range[0];
     823        1617 :             if(freqEnd < range[0])  freqEnd=range[0];
     824             :         
     825        1617 :             if(freqStart > range[1])  freqStart=range[1];
     826        1617 :             if(freqEnd < range[1])  freqEnd=range[1];
     827        1617 :             retval=True;
     828             :           }
     829             :       }
     830             :       }
     831             : 
     832             :     }
     833           6 :     return retval;
     834             :   }
     835        4211 :   void MSUtil::rejectConsecutive(const Vector<Double>& t, Vector<Double>& retval, Vector<Int>& indx){
     836        4211 :     uInt n=t.nelements();
     837        4211 :     if(n >0){
     838        4211 :       retval.resize(n);
     839        4211 :       indx.resize(n);
     840        4211 :       retval[0]=t[0];
     841        4211 :       indx[0]=0;
     842             :     }
     843             :     else
     844           0 :       return;
     845        4211 :     Int prev=0;
     846   275884482 :     for (uInt k=1; k < n; ++k){ 
     847   275880271 :       if(t[k] != retval(prev)){
     848     1647621 :         ++prev;
     849             :         //retval.resize(prev+1, true);
     850     1647621 :         retval[prev]=t[k];
     851             :         //indx.resize(prev+1, true);
     852     1647621 :         indx[prev]=k;
     853             :       }
     854             :     }
     855        4211 :     retval.resize(prev+1, true);
     856        4211 :     indx.resize(prev+1, true);
     857             :     
     858             :   }
     859             : 
     860           0 :   Vector<String> MSUtil::getSpectralFrames(Vector<MFrequency::Types>& types, const MeasurementSet& ms)
     861             :   {
     862           0 :           Vector<String> retval;
     863           0 :           Vector<Int> typesAsInt=MSSpWindowColumns(ms.spectralWindow()).measFreqRef().getColumn();
     864           0 :           if(ms.nrow()==Table(ms.getPartNames()).nrow()){
     865           0 :                   types.resize(typesAsInt.nelements());
     866           0 :                   for (uInt k=0; k < types.nelements(); ++k)
     867           0 :                           types[k]=MFrequency::castType(typesAsInt[k]);
     868             :           }
     869             :           else{
     870           0 :                   Vector<Int> ddId;
     871           0 :                   ScalarColumn<Int> (ms,MS::columnName(MS::DATA_DESC_ID)).getColumn(ddId);
     872           0 :                   Vector<uInt>  uniqIndx;
     873           0 :                   uInt nTimes=GenSort<Int>::sort (ddId, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
     874           0 :                   ddId.resize(nTimes, true);
     875           0 :                   Vector<Int> spwids(nTimes);
     876           0 :                   Vector<Int> spwInDD=MSDataDescColumns(ms.dataDescription()).spectralWindowId().getColumn();
     877           0 :                   for (uInt k=0; k < nTimes; ++k)
     878           0 :                           spwids[k]=spwInDD[ddId[k]];
     879             : 
     880           0 :                   nTimes=GenSort<Int>::sort (spwids, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
     881           0 :                   spwids.resize(nTimes, true);
     882           0 :                   types.resize(nTimes);
     883           0 :                   for(uInt k=0; k <nTimes; ++k)
     884           0 :                           types[k]=MFrequency::castType(typesAsInt[spwids[k]]);
     885             :           }
     886             : 
     887           0 :           retval.resize(types.nelements());
     888           0 :           for (uInt k=0; k < types.nelements(); ++k){
     889           0 :                 retval[k]=MFrequency::showType(types[k]);
     890             :           }
     891             : 
     892             : 
     893           0 :           return retval;
     894             : 
     895             :   }
     896          42 :   void MSUtil::getIndexCombination(const MSColumns& mscol, Matrix<Int>& retval2){
     897          84 :     Vector<Vector<Int> >retval;
     898          84 :     Vector<Int> state = mscol.stateId().getColumn();
     899          84 :     Vector<Int> scan=mscol.scanNumber().getColumn();
     900          84 :     Vector<Double> t=mscol.time().getColumn();
     901          84 :     Vector<Int> fldid=mscol.fieldId().getColumn();
     902          84 :     Vector<Int> ddId=mscol.dataDescId().getColumn();
     903          84 :     Vector<Int> spwid=mscol.dataDescription().spectralWindowId().getColumn();
     904          84 :     Vector<uInt>  uniqIndx;
     905             :     {
     906          84 :       Vector<Double> ddIdD(ddId.shape());
     907          42 :       convertArray(ddIdD, ddId);
     908          42 :       ddIdD+= 1.0; //no zero id
     909             :       //we have to do this as one can have multiple dd for the same time. 
     910          42 :       t*=ddIdD;
     911             :     }
     912          42 :     uInt nTimes=GenSortIndirect<Double>::sort (uniqIndx, t, Sort::Ascending, Sort::QuickSort|Sort::NoDuplicates);
     913          84 :            Vector<Int> comb(4);
     914             :            
     915       11733 :            for (uInt k=0; k < nTimes; ++k){
     916       11691 :              comb(0)=fldid[uniqIndx[k]];
     917       11691 :              comb(1)=spwid[ddId[uniqIndx[k]]];
     918       11691 :              comb(2)=scan(uniqIndx[k]);
     919       11691 :              comb(3)=state(uniqIndx[k]);
     920       11691 :              Bool hasComb=False;
     921       11691 :              if(retval.nelements() >0){
     922       30493 :                for (uInt j=0; j < retval.nelements(); ++j){
     923       18844 :                  if(allEQ(retval[j], comb))
     924       11579 :                    hasComb=True;
     925             :                }
     926             :                
     927             :              }
     928       11691 :              if(!hasComb){
     929         112 :                retval.resize(retval.nelements()+1, True);
     930         112 :                retval[retval.nelements()-1]=comb;
     931             :              }
     932             :            }
     933          42 :            retval2.resize(retval.nelements(),4);
     934         154 :            for (uInt j=0; j < retval.nelements(); ++j)
     935         112 :              retval2.row(j)=retval[j];
     936             : 
     937          42 :   }
     938             : 
     939             : 
     940             : } //# NAMESPACE CASA - END

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