LCOV - code coverage report
Current view: top level - synthesis/MeasurementComponents - EPJones.cc (source / functions) Hit Total Coverage
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Date: 2023-10-25 08:47:59 Functions: 0 30 0.0 %

          Line data    Source code
       1             : //# EPJones.cc: Implementation of EPJOnes VisCal type
       2             : //# Copyright (C) 1996,1997,1998,1999,2000,2001,2002,2003
       3             : //# Associated Universities, Inc. Washington DC, USA.
       4             : //#
       5             : //# This library is free software; you can redistribute it and/or modify it
       6             : //# under the terms of the GNU Library General Public License as published by
       7             : //# the Free Software Foundation; either version 2 of the License, or (at your
       8             : //# option) any later version.
       9             : //#
      10             : //# This library is distributed in the hope that it will be useful, but WITHOUT
      11             : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
      12             : //# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
      13             : //# License for more details.
      14             : //#
      15             : //# You should have received a copy of the GNU Library General Public License
      16             : //# along with this library; if not, write to the Free Software Foundation,
      17             : //# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
      18             : //#
      19             : //# Correspondence concerning AIPS++ should be addressed as follows:
      20             : //#        Internet email: aips2-request@nrao.edu.
      21             : //#        Postal address: AIPS++ Project Office
      22             : //#                        National Radio Astronomy Observatory
      23             : //#                        520 Edgemont Road
      24             : //#                        Charlottesville, VA 22903-2475 USA
      25             : //#
      26             : 
      27             : #include <synthesis/MeasurementComponents/EPJones.h>
      28             : 
      29             : #include <msvis/MSVis/VisBuffer.h>
      30             : #include <msvis/MSVis/VisBuffAccumulator.h>
      31             : #include <casacore/ms/MeasurementSets/MSColumns.h>
      32             : #include <synthesis/MeasurementEquations/VisEquation.h>
      33             : #include <synthesis/TransformMachines/Utils.h>
      34             : #include <synthesis/MeasurementComponents/SteepestDescentSolver.h>
      35             : #include <casacore/casa/Quanta/Quantum.h>
      36             : #include <casacore/casa/Quanta/QuantumHolder.h>
      37             : 
      38             : #include <casacore/tables/TaQL/ExprNode.h>
      39             : 
      40             : #include <casacore/casa/Arrays/ArrayMath.h>
      41             : #include <casacore/casa/BasicSL/String.h>
      42             : #include <casacore/casa/Utilities/Assert.h>
      43             : #include <casacore/casa/Exceptions/Error.h>
      44             : #include <casacore/casa/OS/Memory.h>
      45             : #include <casacore/casa/System/Aipsrc.h>
      46             : 
      47             : #include <sstream>
      48             : 
      49             : #include <casacore/casa/Logging/LogMessage.h>
      50             : #include <casacore/casa/Logging/LogSink.h>
      51             : 
      52             : using namespace casacore;
      53             : namespace casa { //# NAMESPACE CASA - BEGIN
      54             :   
      55             :   
      56             :   // **********************************************************
      57             :   //  EPJones
      58             :   //
      59           0 :   EPJones::EPJones(VisSet& vs):
      60             :     VisCal(vs), 
      61             :     VisMueller(vs),
      62             :     SolvableVisJones(vs),
      63             :     pointPar_(),
      64             :     /*ms_p(0), */ vs_p(&vs),
      65             :     maxTimePerSolution(0), minTimePerSolution(10000000), avgTimePerSolution(0),
      66           0 :     timer(), polMap_p(), tolerance_p(1e-9), gain_p(0.01), niter_p(250)
      67             :   {
      68           0 :     if (prtlev()>2) cout << "EP::EP(vs)" << endl;
      69           0 :     pbwp_p = NULL;
      70             :     //   String msName = vs.msName();
      71             :     //   ms_p = new MeasurementSet(msName);
      72           0 :     setParType(VisCalEnum::REAL);
      73           0 :   }
      74           0 :   EPJones::EPJones(VisSet& vs, MeasurementSet&) :
      75             :     VisCal(vs), 
      76             :     VisMueller(vs),
      77             :     SolvableVisJones(vs),
      78             :     pointPar_(),
      79             :     /* ms_p(&ms),*/ vs_p(&vs),
      80             :     maxTimePerSolution(0), minTimePerSolution(10000000), avgTimePerSolution(0),
      81           0 :     timer(), polMap_p(), tolerance_p(1e-12), gain_p(0.01), niter_p(500)
      82             :   {
      83           0 :     if (prtlev()>2) cout << "EP::EP(vs)" << endl;
      84           0 :     pbwp_p = NULL;
      85             :     //   String msName = vs.msName();
      86             :     //   ms_p = new MeasurementSet(msName);
      87           0 :     setParType(VisCalEnum::REAL);
      88           0 :   }
      89             :   //
      90             :   //-----------------------------------------------------------------------
      91             :   //  
      92           0 :   EPJones::~EPJones() 
      93             :   {
      94           0 :     if (prtlev()>2) cout << "EP::~EP()" << endl;
      95           0 :   }
      96             :   //
      97             :   //-----------------------------------------------------------------------
      98             :   //  
      99           0 :   void EPJones::makeComplexGrid(TempImage<Complex>& Grid, 
     100             :                                 PagedImage<Float>& ModelImage,
     101             :                                 VisBuffer& vb)
     102             :   {
     103           0 :     Vector<Int> whichStokes(0);
     104             :     CoordinateSystem cimageCoord =
     105             :       StokesImageUtil::CStokesCoord(//cimageShape,
     106             :                                     ModelImage.coordinates(),
     107             :                                     whichStokes,
     108           0 :                                     StokesImageUtil::CIRCULAR);
     109             :     
     110           0 :     Grid.resize(IPosition(ModelImage.ndim(),
     111           0 :                           ModelImage.shape()(0),
     112           0 :                           ModelImage.shape()(1),
     113           0 :                           ModelImage.shape()(2),
     114           0 :                           ModelImage.shape()(3)));
     115             :     
     116           0 :     Grid.setCoordinateInfo(cimageCoord);
     117             :     
     118           0 :     Grid.setMiscInfo(ModelImage.miscInfo());
     119           0 :     StokesImageUtil::From(Grid,ModelImage);
     120             :     
     121           0 :     if(vb.polFrame()==MSIter::Linear) 
     122           0 :       StokesImageUtil::changeCStokesRep(Grid,StokesImageUtil::LINEAR);
     123           0 :     else StokesImageUtil::changeCStokesRep(Grid,StokesImageUtil::CIRCULAR);
     124           0 :   }
     125             :   //
     126             :   //-----------------------------------------------------------------------
     127             :   //  
     128           0 :   void EPJones::setModel(const String& modelImageName)
     129             :   {
     130           0 :     ROVisIter& vi(vs_p->iter());
     131           0 :     VisBuffer vb(vi);
     132             :     
     133           0 :     PagedImage<Float> modelImage(modelImageName);
     134           0 :     makeComplexGrid(targetVisModel_,modelImage,vb);
     135           0 :     vi.originChunks();
     136           0 :     vi.origin();
     137           0 :     pbwp_p->initializeToVis(targetVisModel_,vb);
     138             : 
     139           0 :     polMap_p = pbwp_p->getPolMap();
     140             :     //    cout << "Pol Map = " << polMap_p << endl;
     141           0 :   }
     142             :   //
     143             :   //-----------------------------------------------------------------------
     144             :   //  
     145           0 :   void EPJones::setSolve(const Record& solve)
     146             :   {
     147           0 :     Int nFacets=1; Long cachesize=200000000;
     148           0 :     Float paInc=1.0; // 1 deg.
     149           0 :     String cfCacheDirName("tmpCFCache.dir");
     150           0 :     Bool doPBCorr=true, applyPointingOffsets=true;
     151           0 :     if (solve.isDefined("cfcache"))
     152           0 :       cfCacheDirName=solve.asString("cfcache");
     153           0 :     if (solve.isDefined("painc"))
     154           0 :       paInc=solve.asDouble("painc");
     155           0 :     if (solve.isDefined("pbcorr"))
     156           0 :       doPBCorr=solve.asBool("pbcorr");
     157             :     
     158           0 :     if (pbwp_p) delete pbwp_p;
     159             :     
     160           0 :     pbwp_p = new nPBWProjectFT(//*ms_p, 
     161             :                                nFacets, 
     162             :                                cachesize,
     163             :                                cfCacheDirName,
     164             :                                applyPointingOffsets,  
     165             :                                doPBCorr,   //Bool do PB correction before prediction
     166             :                                16,         //Int tilesize=16 
     167             :                                paInc       //Float paSteps=1.0
     168           0 :                                );
     169           0 :     logSink() << LogOrigin("EPJones","setSolve") 
     170             :               << "Using nPBWProjectFT for residual and derivative computations"
     171           0 :               << LogIO::POST;
     172             : 
     173             :     // pbwp_p = new PBMosaicFT(*ms_p, 
     174             :     //                      nFacets, 
     175             :     //                      cachesize,
     176             :     //                      cfCacheDirName,
     177             :     //                      applyPointingOffsets,  
     178             :     //                      doPBCorr,   //Bool do PB correction before prediction
     179             :     //                      16,         //Int tilesize=16 
     180             :     //                      paInc);     //Float paSteps=1.0
     181             :     // logSink() << LogOrigin("EPJones","setSolve") 
     182             :     //        << "Using PBMosaicFT for residual and derivative computations"
     183             :     //        << LogIO::POST;
     184           0 :     casacore::Quantity patol(paInc,"deg");
     185           0 :     logSink() << LogOrigin("EPJones","setSolve") 
     186             :               << "Parallactic Angle tolerance set to " << patol.getValue("deg") << " deg" 
     187           0 :               << LogIO::POST;
     188           0 :     pbwp_p->setPAIncrement(patol);
     189           0 :     pbwp_p->setEPJones((SolvableVisJones *)this);
     190             :     
     191             :     //    pbwp_p->setPAIncrement(paInc);
     192             :     //
     193             :     // What the HELL does the following correspond to? It's not a syntax error!
     194             :     //  azOff(IPosition(1,nAnt())), elOff(IPosition(1,nAnt()));
     195             :     
     196             :     //  azOff.resize(IPosition(1,nAnt()));
     197             :     //  elOff.resize(IPosition(1,nAnt()));
     198             :     //  azOff = elOff = 0.0;
     199           0 :     pointPar_.resize(nPar(),1,nAnt());
     200           0 :     pointPar_ = 0;
     201             :     
     202             :     //    calTableName_="test";
     203             :     //  SolvableVisCal::setSolve(solve);
     204             :     
     205             : //     if (solve.isDefined("t"))
     206             : //       interval()=solve.asFloat("t");
     207           0 :      if (solve.isDefined("solint"))
     208           0 :        solint()=solve.asString("solint");
     209             :     
     210           0 :     QuantumHolder qhsolint;
     211           0 :     String error;
     212           0 :     Quantity qsolint;
     213           0 :     qhsolint.fromString(error,solint());
     214           0 :     if (error.length()!=0)
     215           0 :       throw(AipsError("EPJones::setsolve(): Unrecognized units for solint."));
     216           0 :     qsolint=qhsolint.asQuantumDouble();
     217           0 :     if (qsolint.isConform("s"))
     218           0 :       interval()=qsolint.get("s").getValue();
     219             :     else 
     220             :       {
     221             :         // assume seconds
     222           0 :         interval()=qsolint.getValue();
     223           0 :         solint()=solint()+"s";
     224             :       }
     225             : 
     226           0 :     if (solve.isDefined("preavg"))
     227           0 :       preavg()=solve.asFloat("preavg");
     228             :     
     229           0 :     if (solve.isDefined("refant")) {
     230           0 :       refantlist().resize();
     231           0 :       refantlist()=solve.asArrayInt("refant");
     232             :     }
     233             : 
     234           0 :     if (solve.isDefined("phaseonly"))
     235           0 :       if (solve.asBool("phaseonly"))
     236           0 :         apmode()="phaseonly";
     237             :     
     238           0 :     if (solve.isDefined("table"))
     239           0 :       calTableName()=solve.asString("table");
     240             :     
     241           0 :     if (solve.isDefined("append"))
     242           0 :       append()=solve.asBool("append");
     243             :     
     244             :     // TBD: Warn if table exists (and append=F)!
     245             :     
     246             :     // If normalizable & preavg<0, use inteval for preavg 
     247             :     //  (or handle this per type, e.g. D)
     248             :     // TBD: make a nice log message concerning preavg
     249             :     // TBD: make this work better with solnboundary par
     250             :     //
     251           0 :     if (preavg()<0.0) {
     252           0 :       if (interval()>0.0)
     253             :         // use interval
     254           0 :         preavg()=interval();
     255             :       else
     256             :         // scan-based, so max out preavg() to get full-chunk time-average
     257           0 :         preavg()=DBL_MAX;
     258             :     }
     259             :     // This is the solve context
     260           0 :     setSolved(true);
     261           0 :     setApplied(false);
     262             :     //  SolvableVisCal::setSolve(solve);
     263           0 :     rcs_ = new CalSet<Float>(nSpw());
     264           0 :   };
     265             :   //
     266             :   //-----------------------------------------------------------------------
     267             :   //  
     268           0 :   void EPJones::guessPar(VisBuffer& /*vb*/)
     269             :   {
     270           0 :     pointPar_=0;
     271             :     //  solveRPar() = 0;
     272           0 :   }
     273             :   //
     274             :   //-----------------------------------------------------------------------
     275             :   //  
     276           0 :   Cube<Float>& EPJones::loadPar() 
     277             :   {
     278           0 :     return pointPar_;
     279             :   }
     280             :   //
     281             :   //-----------------------------------------------------------------------
     282             :   //  
     283             :   // Specialized setapply extracts image info ("extracts image info"?)
     284             :   //
     285           0 :   void EPJones::setApply(const Record& apply) 
     286             :   {
     287             :     // Call generic
     288             :     //
     289             :     // Yet again, this assumes a complex CalSet!
     290             :     //    SolvableVisCal::setApply(applypar);
     291           0 :   if (prtlev()>2) cout << "EPJones::setApply(apply)" << endl;
     292             : 
     293             :   // Call VisCal version for generic stuff
     294             :   // Sets the value returned by currSpw().
     295             :   // Resizes currCPar or currRPar to nPar() x nChanPar() x nElem()
     296             :   // Resizes currParOK() to nChanPar() x nElem()
     297             :   // Set currParOK() = true
     298             :   //
     299           0 :   VisCal::setApply(apply);
     300             : 
     301             :   // Collect Cal table parameters
     302           0 :   if (apply.isDefined("table")) {
     303           0 :     calTableName()=apply.asString("table");
     304           0 :     verifyCalTable(calTableName());
     305             :   }
     306             : 
     307           0 :   if (apply.isDefined("select"))
     308           0 :     calTableSelect()=apply.asString("select");
     309             : 
     310             :   // Does this belong here?
     311           0 :   if (apply.isDefined("append"))
     312           0 :     append()=apply.asBool("append");
     313             : 
     314             :   // Collect interpolation parameters
     315           0 :   if (apply.isDefined("interp"))
     316           0 :     tInterpType()=apply.asString("interp");
     317             : 
     318             :   // TBD: move spw to VisCal version?
     319           0 :   if (apply.isDefined("spwmap")) {
     320           0 :     Vector<Int> spwmap(apply.asArrayInt("spwmap"));
     321           0 :     spwMap()(IPosition(1,0),IPosition(1,spwmap.nelements()-1))=spwmap;
     322             :   }
     323             : 
     324             :   // TBD: move interval to VisCal version?
     325           0 :   if (apply.isDefined("t"))
     326           0 :     interval()=apply.asFloat("t");
     327             : 
     328             :   // This is apply context  
     329           0 :   setApplied(true);
     330           0 :   setSolved(false);
     331             : 
     332             :   //  TBD:  "Arranging to apply...."
     333             : 
     334             : 
     335             :   // Create CalSet, from table
     336           0 :   switch(parType())
     337             :     {
     338           0 :     case VisCalEnum::REAL:
     339             :       {
     340           0 :         rcs_ = new CalSet<Float>(calTableName(),calTableSelect(),nSpw(),nPar(),nElem());
     341             :         //      rcs().initCalTableDesc(typeName(),parType());
     342           0 :         break;
     343             :       }
     344           0 :     default:
     345           0 :       throw(AipsError("Unsupported parameter type found in EPJones::setapply().  Bailing out."));
     346             :     }    
     347             : 
     348           0 :   }
     349             :   //
     350             :   //-----------------------------------------------------------------------
     351             :   //  
     352           0 :   void EPJones::applyCal(VisBuffer& vb, Cube<Complex>& Mout) 
     353             :   {
     354             :     //
     355             :     // Inflate model data in VB, Mout references it
     356             :     //  (In this type, model data is always re-calc'd from scratch)
     357             :     //
     358           0 :     vb.modelVisCube(true);
     359           0 :     Mout.reference(vb.modelVisCube());
     360           0 :   }
     361             :   //
     362             :   //-----------------------------------------------------------------------
     363             :   //  
     364           0 :   void EPJones::differentiate(VisBuffer& vb,
     365             :                               Cube<Complex>& Mout,
     366             :                               Array<Complex>& dMout,
     367             :                               Matrix<Bool>& Mflg) 
     368             :   {
     369           0 :     Int nCorr(2); // TBD
     370             :     //
     371             :     // Load the offsets from the internal EPJones storage
     372             :     // (ultimately change the data structures to not need these copies)
     373             :     //
     374           0 :     IPosition ndx(1);
     375           0 :     Cube<Float> pointingOffsets(nPar(),1,nAnt());
     376           0 :     for(ndx(0)=0;ndx(0)<nAnt();ndx(0)++)
     377           0 :       for(Int j=0;j<nPar();j++)
     378             :         {
     379             :           // Use solveRPar()(nPar,0,Ant)
     380           0 :           pointingOffsets(j,0,ndx(0)) = solveRPar()(j,0,ndx(0));//pointPar_(0,0,ndx(0));
     381             :         }
     382             :     //
     383             :     // Size differentiated model
     384             :     //
     385           0 :     dMout.resize(IPosition(5,nCorr,nPar(),1,vb.nRow(),2));
     386             :     //
     387             :     // Model vis shape must match visibility
     388             :     //
     389           0 :     vb.modelVisCube(false);
     390           0 :     Mout.reference(vb.modelVisCube());
     391             :     
     392             :     //
     393             :     // Compute the corrupted model and the derivatives.
     394             :     //  
     395             :     /*
     396             :       Cube<Complex> dVAz(Mout.shape()), dVEl(Mout.shape());
     397             :       pbwp_p->nget(vb, azOff, elOff, Mout,dVAz, dVEl,0,1);
     398             :     */
     399           0 :     VisBuffer dAZVB(vb), dELVB(vb);
     400           0 :     Cube<Complex> dVAz, dVEl;
     401           0 :     dAZVB.modelVisCube().resize(vb.modelVisCube().shape());
     402           0 :     dELVB.modelVisCube().resize(vb.modelVisCube().shape());
     403           0 :     dVAz.reference(dAZVB.modelVisCube()); 
     404           0 :     dVEl.reference(dELVB.modelVisCube());
     405             :     
     406           0 :     pbwp_p->get(vb, dAZVB, dELVB, pointingOffsets);
     407             :     
     408             :     //   for(Int i=0;i<vb.modelVisCube().shape()(2);i++)
     409             :     //     {
     410             :     //       cout << i 
     411             :     //     << " " << vb.modelVisCube()(0,0,i) 
     412             :     //     << " " << vb.modelVisCube()(1,0,i)
     413             :     //     << " " << vb.visCube()(0,0,i) 
     414             :     //     << " " << vb.visCube()(1,0,i)
     415             :     //     << " " << vb.flag()(0,i) 
     416             :     //     << " " << vb.flag()(1,i) 
     417             :     //     << " " << vb.antenna1()(i) 
     418             :     //     << " " << vb.antenna2()(i) 
     419             :     //     << " " << vb.flagRow()(i) 
     420             :     
     421             :     //     << endl;
     422             :     //     }
     423             :     
     424             :     //
     425             :     // For now, copy the derivatives to the required data structure.
     426             :     //
     427           0 :     for(Int j=0;j<nCorr;j++)
     428           0 :       for(Int i=0;i<vb.nRow();i++)
     429             :         {
     430           0 :           dMout(IPosition(5,j,0,0,i,0))=dVAz(j,0,i);
     431           0 :           dMout(IPosition(5,j,1,0,i,0))=dVEl(j,0,i);
     432             :           //
     433             :           // Not sure if the following is what's needed by the solver
     434             :           // 
     435           0 :           dMout(IPosition(5,j,0,0,i,1))=conj(dVAz(j,0,i));
     436           0 :           dMout(IPosition(5,j,1,0,i,1))=conj(dVEl(j,0,i));
     437           0 :           dMout(IPosition(5,j,0,0,i,1))=(dVAz(j,0,i));
     438           0 :           dMout(IPosition(5,j,1,0,i,1))=(dVEl(j,0,i));
     439             :         }
     440             :     
     441           0 :     Mflg.reference(vb.flag());
     442           0 :   }
     443             :   //
     444             :   //-----------------------------------------------------------------------
     445             :   //  
     446           0 :   void EPJones::differentiate(VisBuffer& vb,VisBuffer& dAZVB,VisBuffer& dELVB,
     447             :                               Matrix<Bool>& Mflg) 
     448             :   {
     449             :     //
     450             :     // Load the offsets from the internal EPJones storage
     451             :     // (ultimately change the data structures to not need these copies)
     452             :     //
     453           0 :     IPosition ndx(1);
     454           0 :     Cube<Float> pointingOffsets(nPar(),1,nAnt());
     455           0 :     for(ndx(0)=0;ndx(0)<nAnt();ndx(0)++)
     456           0 :       for(Int j=0;j<nPar();j++)
     457             :         {
     458           0 :           pointingOffsets(j,0,ndx(0)) = solveRPar()(0,0,ndx(0));//pointPar_(0,0,ndx(0));
     459             :         }
     460             :     //
     461             :     // Model vis shape must match visibility
     462             :     //
     463           0 :     vb.modelVisCube(false);
     464             :     //
     465             :     // Compute the corrupted model and the derivatives.
     466             :     //  
     467           0 :     dAZVB = vb;
     468           0 :     dELVB = vb;
     469           0 :     Cube<Complex> dVAz, dVEl;
     470           0 :     dAZVB.modelVisCube().resize(vb.modelVisCube().shape());
     471           0 :     dELVB.modelVisCube().resize(vb.modelVisCube().shape());
     472           0 :     dVAz.reference(dAZVB.modelVisCube()); 
     473           0 :     dVEl.reference(dELVB.modelVisCube());
     474             :     
     475           0 :     pbwp_p->get(vb, dAZVB, dELVB, pointingOffsets);
     476             :     
     477             :     //  cout << pointingOffsets << endl;
     478             :     //   for(Int i=0;i<vb.modelVisCube().shape()(2);i++)
     479             :     //     {
     480             :     //       cout << "Model: " << i 
     481             :     //     << " " << abs(vb.modelVisCube()(0,0,i))
     482             :     //     << " " << arg(vb.modelVisCube()(0,0,i))*57.295
     483             :     //  //         << " " << vb.modelVisCube()(1,0,i)
     484             :     //     << " " << abs(vb.visCube()(0,0,i))
     485             :     //     << " " << arg(vb.visCube()(0,0,i))*57.295
     486             :     //  //         << " " << vb.visCube()(1,0,i)
     487             :     //     << " " << vb.flag()(0,i) 
     488             :     //  //         << " " << vb.flag()(1,i) 
     489             :     //     << " " << vb.antenna1()(i) 
     490             :     //     << " " << vb.antenna2()(i) 
     491             :     //     << " " << vb.uvw()(i)(0)
     492             :     //     << " " << vb.uvw()(i)(1)
     493             :     //     << " " << vb.uvw()(i)(2)
     494             :     //     << " " << vb.flagRow()(i) 
     495             :     //     << " " << vb.flagCube()(0,0,i) 
     496             :     //  //         << " " << vb.flagCube()(1,0,i) 
     497             :     //     << " " << vb.weight()(i)
     498             :     //     << endl;
     499             :     //     }
     500             :     //   exit(0);
     501           0 :     Mflg.reference(vb.flag());
     502           0 :   }
     503             :   
     504           0 :   void EPJones::keep(const Int& slot)
     505             :   {
     506           0 :     if (prtlev()>4) cout << " SVC::keep(i)" << endl;
     507             :     
     508           0 :     if (slot<rcs().nTime(currSpw())) 
     509             :       {
     510           0 :         rcs().fieldId(currSpw())(slot)=currField();
     511           0 :         rcs().time(currSpw())(slot)=refTime();
     512             :         //
     513             :         // Only stop-start diff matters
     514             :         //  TBD: change CalSet to use only the interval
     515             :         //  TBD: change VisBuffAcc to calculate exposure properly
     516             :         //
     517           0 :         rcs().startTime(currSpw())(slot)=0.0;
     518           0 :         rcs().stopTime(currSpw())(slot)=interval();
     519             :         //
     520             :         // For now, just make these non-zero:
     521             :         //
     522           0 :         rcs().iFit(currSpw()).column(slot)=1.0;
     523           0 :         rcs().iFitwt(currSpw()).column(slot)=1.0;
     524           0 :         rcs().fit(currSpw())(slot)=1.0;
     525           0 :         rcs().fitwt(currSpw())(slot)=1.0;
     526             :       
     527           0 :         IPosition blc4(4,0,       focusChan(),0,        slot);
     528           0 :         IPosition trc4(4,nPar()-1,focusChan(),nElem()-1,slot);
     529           0 :         rcs().par(currSpw())(blc4,trc4).nonDegenerate(3) = solveRPar();
     530             :         
     531           0 :         IPosition blc3(3,focusChan(),0,        slot);
     532           0 :         IPosition trc3(3,focusChan(),nElem()-1,slot);
     533           0 :         rcs().parOK(currSpw())(blc4,trc4).nonDegenerate(3)= solveParOK();
     534           0 :         rcs().parErr(currSpw())(blc4,trc4).nonDegenerate(3)= solveParErr();
     535           0 :         rcs().parSNR(currSpw())(blc4,trc4).nonDegenerate(3)= solveParSNR();
     536           0 :         rcs().solutionOK(currSpw())(slot) = anyEQ(solveParOK(),true);
     537             :         
     538             :       }
     539             :     else
     540           0 :       throw(AipsError("SVJ::keep: Attempt to store solution in non-existent CalSet slot"));
     541           0 :   }
     542             :   //
     543             :   //-----------------------------------------------------------------------
     544             :   //  
     545           0 :   void EPJones::setSolve() 
     546             :   {
     547           0 :     if (prtlev()>2)  cout << "EPJ::setSolve()" << endl;
     548             :     
     549           0 :     interval()=10.0;
     550           0 :     refant()=-1;
     551           0 :     apmode()="<none>";
     552           0 :     calTableName()="<none>";
     553             :     
     554             :     // This is the solve context
     555           0 :     setSolved(true);
     556           0 :     setApplied(false);
     557             :     
     558             :     // Create a pristine CalSet
     559             :     //  TBD: move this to inflate()?
     560           0 :     rcs_ = new CalSet<Float>(nSpw());
     561           0 :   }
     562             :   //
     563             :   //-----------------------------------------------------------------------
     564             :   //  
     565           0 :   void EPJones::inflate(const Vector<Int>& nChan,const Vector<Int>& startChan,
     566             :                         const Vector<Int>& nSlot) 
     567             :   {
     568           0 :     if (prtlev()>3) cout << "  EPJ::inflate(,,)" << endl;
     569             :     //
     570             :     // Size up the CalSet
     571             :     //
     572           0 :     rcs().resize(nPar(),nChan,nElem(),nSlot);
     573           0 :     rcs().setStartChan(startChan);
     574           0 :   }
     575             :   //
     576             :   //-----------------------------------------------------------------------
     577             :   //  
     578           0 :   void EPJones::initSolve(VisSet& vs) 
     579             :   {
     580           0 :     if (prtlev()>2) cout << "EPJ::initSolve(vs)" << endl;
     581             :     
     582             :     // Determine solving channelization according to VisSet & type
     583           0 :     setSolveChannelization(vs);
     584             :     
     585             :     // Nominal spwMap in solve is identity
     586           0 :     spwMap().resize(vs.numberSpw());
     587           0 :     indgen(spwMap());
     588             : 
     589             :     // Inflate the CalSet according to VisSet
     590           0 :     SolvableVisCal::inflate(vs);
     591             :     
     592             :     //
     593           0 :     rcs().initCalTableDesc(typeName(),parType());
     594             :     
     595             :     // Size the solvePar arrays
     596           0 :     initSolvePar();
     597           0 :   }
     598             :   //
     599             :   //-----------------------------------------------------------------------
     600             :   //  
     601           0 :   void EPJones::initSolvePar() 
     602             :   {
     603           0 :     if (prtlev()>3) cout << " EPJ::initSolvePar()" << endl;
     604             :     
     605           0 :     for (Int ispw=0;ispw<nSpw();++ispw) 
     606             :       {
     607           0 :         currSpw()=ispw;
     608             :       
     609             :         //      cout << "EPJ::initSolvePar(): " << solveRPar().shape() << " " << solveParOK().shape() << endl;
     610           0 :         solveRPar().resize(nPar(),1,nAnt());
     611           0 :         solveParOK().resize(nPar(),1,nAnt());
     612           0 :         solveParErr().resize(nPar(),1,nAnt());
     613             :         
     614           0 :         solveRPar()=(0.0);
     615           0 :         solveParOK()=true;
     616             : 
     617           0 :         solveParSNR().resize(nPar(),1,nAnt());
     618           0 :         solveParSNR()=0.0;
     619             :       }
     620             : 
     621           0 :     currSpw()=0;
     622           0 :   }
     623             :   //
     624             :   //-----------------------------------------------------------------------
     625             :   //  
     626           0 :   void EPJones::store() 
     627             :   {
     628           0 :     if (prtlev()>3) cout << " EPJ::store()" << endl;
     629             :     
     630           0 :     if (append())
     631           0 :       logSink() << "Appending solutions to table: " << calTableName()
     632           0 :                 << LogIO::POST;
     633             :     else
     634           0 :       logSink() << "Writing solutions to table: " << calTableName()
     635           0 :                 << LogIO::POST;
     636             :     
     637           0 :     rcs().store(calTableName(),typeName(),append());
     638           0 :   }
     639             :   //
     640             :   //-----------------------------------------------------------------------
     641             :   //  
     642           0 :   void EPJones::store(const String& table,const Bool& append) 
     643             :   {
     644           0 :     if (prtlev()>3) cout << " EPJ::store(table,append)" << endl;
     645             :     
     646             :     // Override tablename
     647           0 :     calTableName()=table;
     648           0 :     SolvableVisCal::append()=append;
     649             :     
     650             :     // Call conventional store
     651           0 :     store();
     652           0 :   }
     653             :   //
     654             :   //-----------------------------------------------------------------------
     655             :   //  
     656           0 :   Bool EPJones::verifyForSolve(VisBuffer& vb) 
     657             :   {
     658             :     //  cout << "verifyForSolve..." << endl;
     659             :     
     660           0 :     Int nAntForSolveFinal(-1);
     661           0 :     Int nAntForSolve(0);
     662             :     
     663             :     // We will count baselines and weights per ant
     664             :     //   and set solveParOK accordingly
     665           0 :     Vector<Int> blperant(nAnt(),0);
     666           0 :     Vector<Double> wtperant(nAnt(),0.0);
     667           0 :     Vector<Bool> antOK(nAnt(),false);
     668             :     
     669             :     
     670           0 :     while (nAntForSolve!=nAntForSolveFinal) 
     671             :       {
     672           0 :         nAntForSolveFinal=nAntForSolve;
     673           0 :         nAntForSolve=0;
     674             :         // TBD: optimize indexing with pointers in the following
     675           0 :         blperant=0;
     676           0 :         wtperant=0.0;
     677           0 :         for (Int irow=0;irow<vb.nRow();++irow) 
     678             :           {
     679           0 :             Int a1=vb.antenna1()(irow);
     680           0 :             Int a2=vb.antenna2()(irow);
     681           0 :             if (!vb.flagRow()(irow) && a1!=a2) 
     682             :               {
     683           0 :                 if (!vb.flag()(focusChan(),irow)) 
     684             :                   {
     685           0 :                     blperant(a1)+=1;
     686           0 :                     blperant(a2)+=1;
     687             :             
     688           0 :                     wtperant(a1)+=Double(sum(vb.weightMat().column(irow)));
     689           0 :                     wtperant(a2)+=Double(sum(vb.weightMat().column(irow)));
     690             :                   }
     691             :               }
     692             :           }
     693             :       
     694           0 :         antOK=false;
     695           0 :         for (Int iant=0;iant<nAnt();++iant) 
     696             :           {
     697           0 :             if (blperant(iant)>3 &&
     698           0 :                 wtperant(iant)>0.0) 
     699             :               {
     700             :                 // This antenna is good, keep it
     701           0 :                 nAntForSolve+=1;
     702           0 :                 antOK(iant)=true;
     703             :               }
     704             :             else 
     705             :               {
     706             :                 // This antenna under-represented; flag it
     707           0 :                 vb.flagRow()(vb.antenna1()==iant)=true;
     708           0 :                 vb.flagRow()(vb.antenna2()==iant)=true;
     709             :               }
     710             :           }
     711             :         //    cout << "blperant     = " << blperant << endl;
     712             :         //  cout << "wtperant = " << wtperant << endl;
     713             :         //    cout << "nAntForSolve = " << nAntForSolve << " " << antOK << endl;
     714             :       }
     715             :     // We've converged on the correct good antenna count
     716           0 :     nAntForSolveFinal=nAntForSolve;
     717             :     
     718             :     // Set a priori solution flags  
     719           0 :     solveParOK() = false;
     720           0 :     for (Int iant=0;iant<nAnt();++iant)
     721           0 :       if (antOK(iant))
     722             :         // This ant ok
     723           0 :         solveParOK().xyPlane(iant) = true;
     724             :       else
     725             :         // This ant not ok, set soln to zero
     726           0 :         solveRPar().xyPlane(iant)=0.0;
     727             :     
     728             :     //  cout << "antOK = " << antOK << endl;
     729             :     //  cout << "solveParOK() = " << solveParOK() << endl;
     730             :     //  cout << "amp(solvePar()) = " << amplitude(solvePar()) << endl;
     731             :     
     732           0 :     return (nAntForSolve>3);
     733             :   }
     734             :   //
     735             :   //-----------------------------------------------------------------------
     736             :   //  
     737           0 :   void EPJones::postSolveMassage(const VisBuffer& vb)
     738             :   {
     739           0 :     Array<Float> sol;
     740           0 :     Double PA = getPA(vb);
     741             :     Float dL, dM;
     742           0 :     IPosition ndx(3,0,0,0);
     743             :     
     744           0 :     for(ndx(2)=0;ndx(2)<nAnt();ndx(2)++)
     745             :       {
     746           0 :         ndx(0)=0;      dL = solveRPar()(ndx);
     747           0 :         ndx(0)=1;      dM = solveRPar()(ndx);
     748           0 :         ndx(0)=0;
     749           0 :         solveRPar()(ndx) = dL*cos(PA) - dM*sin(PA);
     750           0 :         ndx(0)=1;
     751           0 :         solveRPar()(ndx) = dL*sin(PA) - dM*cos(PA);
     752             :       }
     753           0 :   };
     754             :   //
     755             :   //-----------------------------------------------------------------------
     756             :   //  
     757           0 :   void EPJones::printActivity(const Int slotNo, const Int fieldId, 
     758             :                               const Int spw, const Int nSolutions)
     759             :   {
     760             :     Int nSlots, nMesg;
     761             : 
     762           0 :     nSlots = rcs().nTime(spw);
     763             :     
     764           0 :     Double timeTaken = timer.all();
     765           0 :     if (maxTimePerSolution < timeTaken) maxTimePerSolution = timeTaken;
     766           0 :     if (minTimePerSolution > timeTaken) minTimePerSolution = timeTaken;
     767           0 :     avgTimePerSolution += timeTaken;
     768           0 :     Double avgT =  avgTimePerSolution/(nSolutions>0?nSolutions:1);
     769             :     //
     770             :     // Boost the no. of messages printed if the next message, based on
     771             :     // the average time per solution, is going to appear after a time
     772             :     // longer than my (SB) patience would permit!  The limit of
     773             :     // patience is set to 10 min.
     774             :     //
     775           0 :     Float boost = avgT*printFraction(nSlots)*nSlots/(10*60.0);
     776           0 :     boost = (boost < 1.0)? 1.0:boost;
     777           0 :     nMesg = (Int)(nSlots*printFraction(nSlots)/boost);
     778           0 :     nMesg = (nMesg<1?1:nMesg);
     779             :     
     780           0 :     Int tmp=abs(nSlots-slotNo); Bool print;
     781           0 :     print = false;
     782           0 :     if ((slotNo == 0) || (slotNo == nSlots-1))  print=true;
     783           0 :     else if ((tmp > 0 ) && ((slotNo+1)%nMesg ==0)) print=true;
     784           0 :     else print=false;
     785             : 
     786           0 :     if (print)
     787             :       {
     788           0 :         Int f = (Int)(100*(slotNo+1)/(nSlots>0?nSlots:1));
     789             :         logSink()<< LogIO::NORMAL 
     790             :                  << "Spw=" << spw << " slot=" << slotNo << "/" << nSlots 
     791             :                  << " field=" << fieldId << ". Done " << f << "%"
     792             :                  << " Time taken per solution (max/min/avg): "
     793             :                  << maxTimePerSolution << "/" 
     794           0 :                  << (minTimePerSolution<0?1:minTimePerSolution) << "/"
     795           0 :                  << avgT << " sec" << LogIO::POST;
     796             :       }
     797           0 :   }
     798             :   //
     799             :   //-----------------------------------------------------------------------
     800             :   //  
     801           0 :   void EPJones::selfGatherAndSolve(VisSet& vs, VisEquation& ve)
     802             :   {
     803             :     //
     804             :     // Create the solver
     805             :     //
     806           0 :     SteepestDescentSolver sds(nPar(),polMap_p,niter_p,tolerance_p);
     807           0 :     logSink() << LogOrigin("EPJones","selfGatherAndSolve")
     808           0 :               << "Pol map = " << polMap_p << endl;
     809           0 :     sds.setGain(gain_p);
     810             :     //sds.setGain(1);
     811             :     //
     812             :     // Inform logger/history
     813             :     //
     814           0 :     logSink() << LogOrigin("EPJones", "selfGatherAndSolve") << "Solving for " << typeName()
     815           0 :               << LogIO::POST;
     816             :     //
     817             :     // Arrange for iteration over data - set up the VisIter and the VisBuffer
     818             :     //
     819           0 :     Block<Int> columns;
     820           0 :     if (interval()==0.0) 
     821             :       {
     822           0 :         columns.resize(5);
     823           0 :         columns[0]=MS::ARRAY_ID;
     824           0 :         columns[1]=MS::SCAN_NUMBER;
     825           0 :         columns[2]=MS::FIELD_ID;
     826           0 :         columns[3]=MS::DATA_DESC_ID;
     827           0 :         columns[4]=MS::TIME;
     828             :       } 
     829             :     else 
     830             :       {
     831           0 :         columns.resize(4);
     832           0 :         columns[0]=MS::ARRAY_ID;
     833           0 :         columns[1]=MS::FIELD_ID;
     834           0 :         columns[2]=MS::DATA_DESC_ID;
     835           0 :         columns[3]=MS::TIME;
     836             :       }
     837           0 :     vs.resetVisIter(columns,interval());
     838           0 :     VisIter& vi(vs.iter());
     839           0 :     VisBuffer vb(vi);
     840             :     
     841             :     //
     842             :     // Make an initial guess for the solutions
     843             :     //
     844           0 :     guessPar(vb);
     845           0 :     initSolve(vs);
     846             :     
     847           0 :     Vector<Int> islot(vs.numberSpw(),0);
     848           0 :     Int nGood(0);
     849             :     
     850           0 :     for (vi.originChunks(); vi.moreChunks(); vi.nextChunk()) 
     851             :       {
     852           0 :         Int spw(vi.spectralWindow());
     853             :         // The following now works on the first VB only.  Is this right?
     854           0 :         Bool vbOk=syncSolveMeta(vb,vi.fieldId());
     855             :         
     856           0 :         if (vbOk) 
     857             :           {
     858           0 :             Bool totalGoodSol(false);
     859           0 :             for (Int ich=nChanPar()-1;ich>-1;--ich) 
     860             :               {
     861           0 :                 focusChan()=ich;
     862             :                 Bool goodSoln;
     863           0 :                 timer.mark();
     864             : //              goodSoln = (sds.solve(ve, *this, svb,nAnt(),islot(spw))<0)?false:True;
     865           0 :                 goodSoln = (sds.solve2(ve,vi,*this, nAnt(),islot(spw))<0)?false:True;
     866             : //              {
     867             : //                cout << "Solutions = " << MVTime(vb.time()(0)/86400.0) 
     868             : //                     << solveRPar()*57.295*3600 << " "
     869             : //                     << endl;
     870             : //              }       
     871           0 :                 if (goodSoln) 
     872             :                   {
     873             :                     //
     874             :                     // Apply transform (if any) to the solutions.
     875             :                     //
     876             : //                  postSolveMassage(vb);
     877           0 :                     totalGoodSol=true;
     878           0 :                     keep(islot(spw));
     879           0 :                     printActivity(islot(spw),vi.fieldId(),spw,nGood);         
     880             :                   }
     881             :               } // parameter channels
     882           0 :             if (totalGoodSol)   nGood++;
     883             :           } // vbOK
     884           0 :         islot(spw)++;
     885             :       } // chunks
     886             :     logSink() << "  Found " << nGood << " good " 
     887           0 :               << typeName() << " solutions." 
     888           0 :               << LogIO::POST;
     889           0 :     store();
     890           0 :   };
     891             :   //
     892             :   //-----------------------------------------------------------------------
     893             :   //  
     894           0 :   void EPJones::diffResiduals(VisIter& vi, VisEquation& /*ve*/,
     895             :                               VisBuffer& residuals,
     896             :                               VisBuffer& dAZVB,
     897             :                               VisBuffer& dELVB,
     898             :                               Matrix<Bool>& Mflg)
     899             :   {
     900           0 :     VisBuffAccumulator resAvgr(nAnt(),preavg(),false),
     901           0 :       dRes1Avgr(nAnt(), preavg(), false),
     902           0 :       dRes2Avgr(nAnt(), preavg(), false);
     903           0 :     VisBuffer vb(vi);
     904           0 :     IPosition shp;
     905             :     //
     906             :     // Load the offsets from the internal EPJones storage
     907             :     // (ultimately change the data structures to not need these copies)
     908             :     //
     909             :     //    Cube<Float> pointingOffsets(2,1,nAnt());
     910             : //     Int nchan=1;
     911             : //     Cube<Float> pointingOffsets(nPar(),nchan,nAnt());
     912             : //     for(Int ant=0;ant<nAnt();ant++)
     913             : //       for(Int par=0;par<nPar();par++)
     914             : //      for(Int chan=0;chan<nchan;chan++)
     915             : //        pointingOffsets(par,chan,ant) = solveRPar()(par,chan,ant);//pointPar_(0,0,ndx(0));
     916             : 
     917             :     //    cout << "EPJ: " << pointingOffsets << endl;
     918             :     //
     919             :     // Model vis shape must match visibility
     920             :     //
     921           0 :     residuals.modelVisCube(false);
     922             : 
     923           0 :     residuals.modelVisCube() = Complex(0,0);
     924           0 :     dAZVB.modelVisCube() = dELVB.modelVisCube() = Complex(0,0);  
     925             :     static Int j=0;
     926             : /*
     927             :     cout << "EPJ::diff: " << residuals.modelVisCube().shape() << " "
     928             :                           << vb.visCube().shape() << " " 
     929             :                           << vb.modelVisCube().shape() << " "
     930             :                           << dAZVB.modelVisCube().shape() << " "
     931             :                           << dELVB.modelVisCube().shape() << endl;
     932             : */
     933           0 :     for (vi.origin(); vi.more(); vi++) 
     934             :       {
     935             :         //      ve.collapse(vb);
     936           0 :         dAZVB = dELVB = vb;
     937           0 :         shp = vb.modelVisCube().shape();
     938             : 
     939             :         // Use the target VBs as temp. storage as well 
     940             :         // (reduce the max. mem. footprint)
     941           0 :         dAZVB.modelVisCube().resize(shp);
     942           0 :         dELVB.modelVisCube().resize(shp);
     943           0 :         vb.modelVisCube() = dAZVB.modelVisCube() = dELVB.modelVisCube() = Complex(0,0);
     944             : 
     945             :         //      pbwp_p->get(vb, dAZVB, dELVB, pointingOffsets);
     946           0 :         pbwp_p->get(vb, dAZVB, dELVB, solveRPar());
     947             :         //      pbwp_p->get(vb);
     948             :         /*
     949             :         //
     950             :         // Debugging code.
     951             :         // This can be slow.  So comment it out for production line code.
     952             :         //
     953             :         String mesg;
     954             :         ostringstream mesg2;
     955             :         mesg2 << " VB no. " << j << " in time integration in EJones::diffResiduals "
     956             :               << "Pointing offsets = " << pointingOffsets;
     957             :         if (isVBNaN(vb,mesg)) throw(AipsError("VB has NaN "+mesg+String(mesg2.str().c_str())));
     958             :         if (isVBNaN(dAZVB,mesg)) throw(AipsError("AZVB has NaN "+mesg+String(mesg2.str().c_str())));
     959             :         if (isVBNaN(dELVB,mesg)) throw(AipsError("ELVB has NaN "+mesg+String(mesg2.str().c_str())));
     960             :         */
     961             :         //      if (j == 4)
     962             : /*
     963             :           {
     964             :             //      pbwp_p->get(vb, dAZVB, dELVB, pointingOffsets);
     965             :             cout << "chunk==========================================" << endl;
     966             :             cout << vb.modelVisCube().shape() << " " << vb.visCube().shape() << " " << vb.flag().shape() 
     967             :                  << vb.flagRow().shape() << " " << vb.flagCube().shape() 
     968             :                  << solveRPar().shape() << " "
     969             :                  << endl;
     970             :             Int m=1;
     971             :             for(Int i=0;i<vb.modelVisCube().shape()(2);i++)
     972             :             //for(Int i=0;i<2;i++)
     973             :               {
     974             :                 cout << "EPJ Residual: " << i 
     975             :                      << " " << getCurrentTimeStamp(vb)/1e9-4.68002
     976             :                      << " " << vb.modelVisCube()(m,0,i)
     977             :                      << " " << vb.visCube()(m,0,i)
     978             :                      << " " << vb.modelVisCube()(m,0,i)-vb.visCube()(m,0,i) 
     979             :                      << " " << vb.antenna1()(i)<< "-" << vb.antenna2()(i) 
     980             :                      << " " << vb.flag()(0,i) 
     981             :                      << " " << vb.flagRow()(i) 
     982             :                      << " " << vb.flagCube()(m,0,i) 
     983             :                      << " " << solveRPar()(0,0,vb.antenna1()(i))
     984             :                      << " " << solveRPar()(0,0,vb.antenna2()(i))
     985             :                      << " " << solveRPar()(1,0,vb.antenna1()(i))
     986             :                      << " " << solveRPar()(1,0,vb.antenna2()(i))
     987             :                      << " " << solveRPar()(2,0,vb.antenna1()(i))
     988             :                      << " " << solveRPar()(2,0,vb.antenna2()(i))
     989             :                      << endl;
     990             :               }
     991             :             //      exit(0);
     992             :           }
     993             : */
     994             : 
     995           0 :         vb.modelVisCube() -= vb.visCube();  // Residual = VModel - VObs
     996             :         //      vb.modelVisCube() -= vb.correctedVisCube();  // Residual = VModel - VObs
     997             : 
     998           0 :         resAvgr.accumulate(vb);
     999           0 :         dRes1Avgr.accumulate(dAZVB);
    1000           0 :         dRes2Avgr.accumulate(dELVB);
    1001           0 :         j++;
    1002             :       }
    1003             :     
    1004             : 
    1005           0 :     resAvgr.finalizeAverage();
    1006           0 :     dRes1Avgr.finalizeAverage();
    1007           0 :     dRes2Avgr.finalizeAverage();
    1008             :     //
    1009             :     // First copy the internals of the averaged VisBuffers (i.e, Time,
    1010             :     // UVW, Weights, etc.)
    1011             :     //
    1012           0 :     residuals = resAvgr.aveVisBuff();
    1013           0 :     dAZVB = dRes1Avgr.aveVisBuff();
    1014           0 :     dELVB = dRes2Avgr.aveVisBuff();
    1015             :     //
    1016             :     // Now resize the modelVisCube() of the target VisBuffers (Not
    1017             :     // resizing the LHS in LHS=RHS of CASA Arrays must be leading to
    1018             :     // extra code of this type all over the place)
    1019             :     //
    1020             :     //    shp = resAvgr.aveVisBuff().modelVisCube().shape();  
    1021             :     //
    1022             :     // The data cubes...
    1023             :     //
    1024           0 :     residuals.modelVisCube().resize(resAvgr.aveVisBuff().modelVisCube().shape());
    1025           0 :     dAZVB.modelVisCube().resize(dRes1Avgr.aveVisBuff().modelVisCube().shape());
    1026           0 :     dELVB.modelVisCube().resize(dRes2Avgr.aveVisBuff().modelVisCube().shape());
    1027             :     // The flag cubes..
    1028           0 :     residuals.flagCube().resize(resAvgr.aveVisBuff().flagCube().shape());
    1029           0 :     dAZVB.flagCube().resize(dRes1Avgr.aveVisBuff().flagCube().shape());
    1030           0 :     dELVB.flagCube().resize(dRes2Avgr.aveVisBuff().flagCube().shape());
    1031             :     // The flags...
    1032           0 :     residuals.flag().resize(resAvgr.aveVisBuff().flag().shape());
    1033           0 :     dAZVB.flag().resize(dRes1Avgr.aveVisBuff().flag().shape());
    1034           0 :     dELVB.flag().resize(dRes2Avgr.aveVisBuff().flag().shape());
    1035             :     // The row flags....
    1036           0 :     residuals.flagRow().resize(resAvgr.aveVisBuff().flagRow().shape());
    1037           0 :     dAZVB.flagRow().resize(dRes1Avgr.aveVisBuff().flagRow().shape());
    1038           0 :     dELVB.flagRow().resize(dRes2Avgr.aveVisBuff().flagRow().shape());
    1039             : 
    1040           0 :     residuals.weight().resize(resAvgr.aveVisBuff().weight().shape());
    1041             :     //
    1042             :     // Now copy the modelVisCube() from the averaged VisBuffers to the
    1043             :     // target VisBuffers().
    1044             :     //
    1045             :     // The data cubes...
    1046           0 :     residuals.modelVisCube() = resAvgr.aveVisBuff().modelVisCube();
    1047           0 :     dAZVB.modelVisCube()     = dRes1Avgr.aveVisBuff().modelVisCube();
    1048           0 :     dELVB.modelVisCube()     = dRes2Avgr.aveVisBuff().modelVisCube();
    1049             : 
    1050             :     // The flag cubes...    
    1051           0 :     residuals.flagCube() = resAvgr.aveVisBuff().flagCube();
    1052           0 :     dAZVB.flagCube()     = dRes1Avgr.aveVisBuff().flagCube();
    1053           0 :     dELVB.flagCube()     = dRes2Avgr.aveVisBuff().flagCube();
    1054             :     // The flags...
    1055           0 :     residuals.flag() = resAvgr.aveVisBuff().flag();
    1056           0 :     dAZVB.flag()     = dRes1Avgr.aveVisBuff().flag();
    1057           0 :     dELVB.flag()     = dRes2Avgr.aveVisBuff().flag();
    1058             :     // The row flags...
    1059           0 :     residuals.flagRow() = resAvgr.aveVisBuff().flagRow();
    1060           0 :     dAZVB.flagRow()     = dRes1Avgr.aveVisBuff().flagRow();
    1061           0 :     dELVB.flagRow()     = dRes2Avgr.aveVisBuff().flagRow();
    1062             : 
    1063           0 :     residuals.weight() = resAvgr.aveVisBuff().weight();
    1064             :     //
    1065             :     // Average the residuals and the derivates in frequency.
    1066             :     //
    1067           0 :     residuals.freqAveCubes();
    1068           0 :     dAZVB.freqAveCubes();
    1069           0 :     dELVB.freqAveCubes();
    1070             :     /*
    1071             :     residuals=dAZVB=dELVB=vb;
    1072             :     shp = vb.modelVisCube().shape();  
    1073             :     residuals.modelVisCube().resize(shp);
    1074             :     dAZVB.modelVisCube().resize(shp);
    1075             :     dELVB.modelVisCube().resize(shp);
    1076             :     
    1077             :     residuals.modelVisCube() = vb.modelVisCube();
    1078             :     dAZVB.modelVisCube()     = dAZVB.modelVisCube();
    1079             :     dELVB.modelVisCube()     = dELVB.modelVisCube();
    1080             :     */
    1081             : /*
    1082             :           {
    1083             :             //      pbwp_p->get(vb, dAZVB, dELVB, pointingOffsets);
    1084             :             cout << "chunk==========================================" << endl;
    1085             :             cout << residuals.modelVisCube().shape() << " " 
    1086             :                  << residuals.visCube().shape() << " " 
    1087             :                  << residuals.flag().shape() 
    1088             :                  << residuals.flagRow().shape() << " " 
    1089             :                  << residuals.flagCube().shape() << endl;
    1090             :             Int m=1;
    1091             :             for(Int i=0;i<residuals.modelVisCube().shape()(2);i++)
    1092             :             //for(Int i=0;i<2;i++)
    1093             :               {
    1094             :                 cout << "EPJ AvgResidual: " << i 
    1095             :                      << " " << getCurrentTimeStamp(vb)/1e9-4.68002
    1096             :                      << " " << residuals.modelVisCube()(m,0,i)
    1097             :                      << " " << residuals.visCube()(m,0,i)
    1098             :                      << " " << residuals.modelVisCube()(m,0,i)-residuals.visCube()(m,0,i) 
    1099             :                      << " " << residuals.antenna1()(i)<< "-" << residuals.antenna2()(i) 
    1100             :                      << " " << residuals.flag()(0,i) 
    1101             :                      << " " << residuals.flagRow()(i) 
    1102             :                      << " " << residuals.flagCube()(m,0,i) 
    1103             :                      << " " << solveRPar()(0,0,residuals.antenna1()(i))
    1104             :                      << " " << solveRPar()(0,0,residuals.antenna2()(i))
    1105             :                      << " " << solveRPar()(1,0,residuals.antenna1()(i))
    1106             :                      << " " << solveRPar()(1,0,residuals.antenna2()(i))
    1107             :                      << " " << solveRPar()(2,0,residuals.antenna1()(i))
    1108             :                      << " " << solveRPar()(2,0,residuals.antenna2()(i))
    1109             :                      << endl;
    1110             :               }
    1111             :             //      exit(0);
    1112             :           }
    1113             : */
    1114           0 :     Mflg.reference(residuals.flag());  
    1115             :     //    shp = residuals.flag().shape();
    1116           0 :   }
    1117             :   
    1118             :   //
    1119             :   // Quick-n-dirty implementation - to be replaced by use of CalInterp
    1120             :   // class if-and-when that's ready for use
    1121             :   //
    1122           0 :   void  EPJones::nearest(const Double thisTime, Array<Float>& vals)
    1123             :   {
    1124           0 :     Array<Float>  par  = getOffsets(currSpw());
    1125           0 :     Vector<Double> time = getTime(currSpw());
    1126             :     //    Int nant=nAnt();
    1127           0 :     uInt nTimes = time.nelements(), slot=0;
    1128           0 :     Double dT=abs(time[0]-thisTime);
    1129           0 :     IPosition shp=par.shape();
    1130             : 
    1131           0 :     for(uInt i=0;i<nTimes;i++)
    1132           0 :       if (abs(time[i]-thisTime) < dT)
    1133             :         {
    1134           0 :           dT = abs(time[i]-thisTime);
    1135           0 :           slot=i;
    1136             :         }
    1137             : 
    1138           0 :     if (slot >= nTimes) throw(AipsError("EPJones::nearest(): Internal problem - "
    1139           0 :                                         "nearest slot is out of range"));
    1140           0 :     Array<Float> tmp=par(IPosition(4,0,0,0,slot), IPosition(4,shp[0]-1,shp[1]-1,shp[2]-1,slot));
    1141           0 :     vals.resize();
    1142           0 :     vals = tmp;
    1143           0 :   }
    1144             : 
    1145           0 : void EPJones::printRPar()
    1146             : {
    1147           0 :      Int n=solveRPar().shape()(2);
    1148           0 :      for(Int i=0;i<n;i++)
    1149           0 :         cout << solveRPar()(0,0,i) << " "
    1150           0 :              << solveRPar()(1,0,i) << " "
    1151           0 :              << solveRPar()(2,0,i) << " "
    1152           0 :              << solveRPar()(3,0,i) 
    1153           0 :              << endl;
    1154           0 : }
    1155             : 
    1156             : } //# NAMESPACE CASA - END
    1157             : 
    1158             : 
    1159             : //  cout << pointingOffsets << endl;
    1160             : //   for(Int i=0;i<vb.modelVisCube().shape()(2);i++)
    1161             : //     {
    1162             : //       cout << "Model: " << i 
    1163             : //         << " " << abs(vb.modelVisCube()(0,0,i))
    1164             : //         << " " << arg(vb.modelVisCube()(0,0,i))*57.295
    1165             : //      //         << " " << vb.modelVisCube()(1,0,i)
    1166             : //         << " " << abs(vb.visCube()(0,0,i))
    1167             : //         << " " << arg(vb.visCube()(0,0,i))*57.295
    1168             : //      //         << " " << vb.visCube()(1,0,i)
    1169             : //         << " " << vb.flag()(0,i) 
    1170             : //      //         << " " << vb.flag()(1,i) 
    1171             : //         << " " << vb.antenna1()(i) 
    1172             : //         << " " << vb.antenna2()(i) 
    1173             : //         << " " << vb.uvw()(i)(0)
    1174             : //         << " " << vb.uvw()(i)(1)
    1175             : //         << " " << vb.uvw()(i)(2)
    1176             : //         << " " << vb.flagRow()(i) 
    1177             : //         << " " << vb.flagCube()(0,0,i) 
    1178             : //      //         << " " << vb.flagCube()(1,0,i) 
    1179             : //         << " " << vb.weight()(i)
    1180             : //         << endl;
    1181             : //     }
    1182             : //   exit(0);

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