LCOV - code coverage report
Current view: top level - synthesis/TransformMachines - BeamSkyJones.cc (source / functions) Hit Total Coverage
Test: casa_coverage.info Lines: 204 368 55.4 %
Date: 2023-10-25 08:47:59 Functions: 15 36 41.7 %

          Line data    Source code
       1             : //# BeamSkyJones.cc: Implementation for BeamSkyJones
       2             : //# Copyright (C) 1996,1997,1998,1999,2000,2001,2002,2003
       3             : //# Associated Universities, Inc. Washington DC, USA.
       4             : //#
       5             : //# This library is free software; you can redistribute it and/or modify it
       6             : //# under the terms of the GNU Library General Public License as published by
       7             : //# the Free Software Foundation; either version 2 of the License, or (at your
       8             : //# option) any later version.
       9             : //#
      10             : //# This library is distributed in the hope that it will be useful, but WITHOUT
      11             : //# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
      12             : //# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
      13             : //# License for more details.
      14             : //#
      15             : //# You should have received a copy of the GNU Library General Public License
      16             : //# along with this library; if not, write to the Free Software Foundation,
      17             : //# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
      18             : //#
      19             : //# Correspondence concerning AIPS++ should be adressed as follows:
      20             : //#        Internet email: aips2-request@nrao.edu.
      21             : //#        Postal address: AIPS++ Project Office
      22             : //#                        National Radio Astronomy Observatory
      23             : //#                        520 Edgemont Road
      24             : //#                        Charlottesville, VA 22903-2475 USA
      25             : //#
      26             : //#
      27             : //# $Id$
      28             : 
      29             : #include <casacore/casa/aips.h>
      30             : #include <casacore/casa/BasicSL/Complex.h>
      31             : 
      32             : #include <casacore/ms/MeasurementSets/MeasurementSet.h>
      33             : #include <casacore/ms/MeasurementSets/MSColumns.h>
      34             : #include <casacore/ms/MeasurementSets/MSObsColumns.h>
      35             : #include <casacore/ms/MeasurementSets/MSSpWindowColumns.h>
      36             : #include <casacore/tables/Tables.h>
      37             : #include <casacore/measures/Measures/Stokes.h>
      38             : #include <casacore/measures/Measures/MeasConvert.h>
      39             : 
      40             : #include <casacore/casa/BasicSL/Constants.h>
      41             : #include <casacore/measures/Measures/MeasTable.h>
      42             : #include <components/ComponentModels/Flux.h>
      43             : #include <components/ComponentModels/ComponentShape.h>
      44             : #include <components/ComponentModels/TabularSpectrum.h>
      45             : #include <components/ComponentModels/ConstantSpectrum.h>
      46             : #include <components/ComponentModels/PointShape.h>
      47             : #include <synthesis/TransformMachines/BeamSkyJones.h>
      48             : #include <synthesis/TransformMachines/PBMath.h>
      49             : 
      50             : #include <msvis/MSVis/VisBuffer.h>
      51             : 
      52             : #include <casacore/images/Images/ImageInterface.h>
      53             : #include <casacore/images/Regions/ImageRegion.h>
      54             : 
      55             : #include <casacore/casa/Utilities/Assert.h>
      56             : 
      57             : /*
      58             : // temporary, for debugging
      59             : #include <casacore/casa/Quanta/MVAngle.h>
      60             : void printDirection(std::ostream &os,const casa::MDirection &dir) throw (casa::AipsError) {
      61             :   double lngbuf=dir.getValue().getLong("deg").getValue();
      62             :   if (lngbuf<0) lngbuf+=360.;
      63             :   os<<(dir.getRefString()!="GALACTIC"?casa::MVAngle::Format(casa::MVAngle::TIME):
      64             :   casa::MVAngle::Format(casa::MVAngle::ANGLE))<<casa::MVAngle(casa::Quantity(lngbuf,"deg"))<<" "
      65             :     <<casa::MVAngle(dir.getValue().getLat("deg"))<<
      66             :     " ("<<dir.getRefString()<<")";
      67             : }
      68             : //
      69             : */
      70             : 
      71             : using namespace casacore;
      72             : namespace casa { //# NAMESPACE CASA - BEGIN
      73             : 
      74          45 : BeamSkyJones::BeamSkyJones( 
      75             :                            const Quantity &parallacticAngleIncrement,
      76             :                            BeamSquint::SquintType doSquint,
      77           0 :                            const Quantity &skyPositionThreshold) :
      78             :      doSquint_p(doSquint),
      79          45 :      parallacticAngleIncrement_p(parallacticAngleIncrement.getValue("rad")),
      80          45 :      skyPositionThreshold_p(skyPositionThreshold.getValue("rad")),
      81             :      lastUpdateVisBuffer_p(NULL), lastUpdateRow_p(-1),
      82         135 :      lastUpdateIndex1_p(-1), lastUpdateIndex2_p(-1), hasBeenApplied(false), vbutil_p(nullptr)
      83             :      
      84             : {  
      85          45 :   reset();
      86          45 :   setThreshold(0.01); // use this in apply to determine level of cutoff
      87          45 : };
      88             : 
      89          65 : void BeamSkyJones::reset()
      90             : {
      91          65 :   lastFieldId_p=-1;
      92          65 :   lastArrayId_p=-1;
      93          65 :   lastMSId_p=0;
      94          65 :   lastTime_p=-1.0;
      95          65 :   telescope_p="";
      96          65 : }
      97             : 
      98          45 : BeamSkyJones::~BeamSkyJones()
      99             : {
     100          45 : };
     101             : 
     102           0 : void BeamSkyJones::showState(LogIO& os)
     103             : {
     104           0 :   os << "Field ID    = " << lastFieldId_p+1 << LogIO::POST;
     105           0 :   os << "Telescope   = " << telescope_p << LogIO::POST;
     106           0 :   for (uInt i=0;i<lastParallacticAngles_p.nelements();++i) {
     107             :        os << "ParAngle[d] ("<<i<<" model) = " <<
     108           0 :             lastParallacticAngles_p[i]/C::pi*180.<< LogIO::POST;
     109             :        os << "Pointing direction ("<<i<<" model) = "<<
     110           0 :              lastDirections_p[i].getAngle().getValue("deg")(0) <<
     111           0 :     ", " <<  lastDirections_p[i].getAngle().getValue("deg")(1) << LogIO::POST;
     112             :   }
     113           0 :   os << "delta PA[d] = " << Quantity(parallacticAngleIncrement_p,"rad").getValue("deg") << LogIO::POST;
     114           0 :   os << "skyPositionThreshold[d] = " << Quantity(skyPositionThreshold_p,"rad").getValue("deg") << LogIO::POST;
     115           0 :   os << "SquintType  = " << (Int)(doSquint_p) << LogIO::POST;
     116           0 : };
     117             : 
     118           0 : String BeamSkyJones::telescope(){
     119           0 :   return telescope_p;
     120             : }
     121             : // update the indices cache. This method could be made protected in the
     122             : // future (need access functions for lastUpdateIndex?_p to benefit from it)
     123             : // Cache will be valid for a given VisBuffer and row
     124         771 : void BeamSkyJones::updatePBMathIndices(const VisBuffer &vb, Int row) const
     125             : {
     126             :   // for debug
     127             :   // cout<<endl<<"BeamSkyJones::updatePBMathIndices row="<<row<<endl<<endl;
     128             :   //
     129             : 
     130             :   // we will not check msId, arrayId and fieldID as they are supposed to be
     131             :   // checked before this method is called. However, if this method is to
     132             :   // be made protected, a change may be required here to avoid nasty
     133             :   // surprises in the future.
     134             : 
     135         771 :   if (&vb==lastUpdateVisBuffer_p && row==lastUpdateRow_p) return;
     136             : 
     137         108 :   lastUpdateVisBuffer_p=&vb;
     138         108 :   lastUpdateRow_p=row;
     139             : 
     140             :   // Getting the reference on antennae/feed IDs is a
     141             :   // fast operation as caching is implemented inside VisBuffer.
     142         108 :   DebugAssert(row<(Int)vb.antenna1().nelements(),AipsError);
     143         108 :   Int ant1=vb.antenna1()[row];
     144         108 :   Int ant2=vb.antenna2()[row];
     145         108 :   Int feed1=vb.feed1()[row];
     146         108 :   Int feed2=vb.feed2()[row];  
     147             : 
     148             :   // telescope_p should be valid at this stage because it is updated
     149             :   // after each ArrayID change. Care must be taken if the method is to be
     150             :   // made protected.
     151         108 :   lastUpdateIndex1_p=indexTelescope(telescope_p,ant1,feed1);
     152         108 :   lastUpdateIndex2_p=indexTelescope(telescope_p,ant2,feed2);
     153             : }
     154             : 
     155         838 : Bool BeamSkyJones::changed(const VisBuffer& vb, Int row)
     156             : {
     157             :   // for debug
     158             :   // cout<<endl<<"BeamSkyJones::changed row="<<row<<" lastUpdateRow_p="<<
     159             :   //         lastUpdateRow_p<<endl<<endl;  
     160             :   //
     161             :   
     162         838 :   if (row < 0) row = 0;
     163             :   
     164        1621 :   if(vb.msId() != lastMSId_p || vb.arrayId()!=lastArrayId_p ||
     165         783 :      vb.fieldId()!=lastFieldId_p)  {
     166         175 :         lastUpdateVisBuffer_p=NULL; // invalidate index cache
     167         175 :         return true;
     168             :   }
     169             : 
     170         663 :   MDirection::Types pointingdirType=MDirection::castType(lastDirections_p[lastUpdateIndex1_p].getRef().getType());
     171             :   //if in a local frame and time change point most probably changed
     172         663 :   if((pointingdirType >= MDirection::HADEC) && (pointingdirType <= MDirection::AZELSWGEO)){
     173           0 :     if(lastTime_p != vb.time()(0))
     174           0 :       return True;
     175             :   }
     176             : 
     177             :     //if (lastUpdateIndex1_p<0 || lastUpdateIndex2_p<0) return true;
     178             :   
     179         663 :   updatePBMathIndices(vb,row); // lastUpdateIndex?_p are now valid
     180             : 
     181             :   //Unnecessary ...i believe and causes issues with PSF making
     182             :   //if (!hasBeenApplied) return true; // we shouldn't have such a flag in
     183             :                  // a well designed code
     184             : 
     185         663 :   if (!lastParallacticAngles_p.nelements() && myPBMaths_p.nelements())
     186           0 :        return true; // it's a first call of this method and setPBMath has
     187             :                     // definitely been called before
     188             : 
     189             :   
     190             : 
     191             :   // Obtaining a reference on parallactic angles is a fast operation as
     192             :   // caching is implemented inside VisBuffer.
     193         663 :   Float feed1_pa=vb.feed1_pa()[row];
     194         663 :   Float feed2_pa=vb.feed2_pa()[row];  
     195             : 
     196             :   // it may be good to check here whether an indexed beam model
     197             :   // depend on parallactic angle before returning true
     198             :   // An additional interface function may be required for PBMath classes
     199             : 
     200         663 :   if (lastUpdateIndex1_p!=-1)
     201         663 :       if (abs(feed1_pa-lastParallacticAngles_p[lastUpdateIndex1_p]) >
     202         663 :               parallacticAngleIncrement_p) return true;
     203             : 
     204         663 :    if (lastUpdateIndex2_p!=-1)
     205         663 :       if (abs(feed2_pa-lastParallacticAngles_p[lastUpdateIndex2_p]) >
     206         663 :               parallacticAngleIncrement_p) return true;
     207             : 
     208             :   /*
     209             :    These direction test are not used right now  and are terrible calculations to do on 
     210             :    billions of rows of data
     211             :    If it is needed a faster algorithm for changed direction is needed
     212             : ////          
     213             :   if (lastUpdateIndex1_p!=-1)
     214             :       if (!directionsCloseEnough(lastDirections_p[lastUpdateIndex1_p],
     215             :                      vb.direction1()[row])) return true;
     216             : 
     217             :   if (lastUpdateIndex2_p!=-1)
     218             :       if (!directionsCloseEnough(lastDirections_p[lastUpdateIndex2_p],
     219             :                      vb.direction2()[row])) return true;    
     220             :   */
     221             : 
     222         663 :   return false;
     223             : };
     224             : 
     225             : // return true if two directions are close enough to consider the
     226             : // operator unchanged, false otherwise
     227           0 : Bool BeamSkyJones::directionsCloseEnough(const MDirection &dir1,
     228             :                            const MDirection &dir2) const
     229             : {
     230             :   Double sep; 
     231           0 :   if (dir1.getRef()!=dir2.getRef()){
     232             :     //cerr << "dir1 " << dir1.toString() << " dir2 " << dir2.toString() << endl;
     233           0 :     sep=dir1.getValue().separation(MDirection::Convert(dir2.getRef(),
     234           0 :               dir1.getRef())(dir2).getValue());
     235             : 
     236             :   }
     237           0 :   else sep=dir1.getValue().separation(dir2.getValue());
     238           0 :   return (fabs(sep)<skyPositionThreshold_p);
     239             : }
     240             : 
     241             : // Does this BeamSkyJones change during this buffer, starting from
     242             : // row1?  If row2 <0, row2 = nRow()-1
     243         306 : Bool BeamSkyJones::changedBuffer(const VisBuffer& vb, Int row1, Int& row2)
     244             : {
     245         306 :   Int irow = row1;
     246         306 :   if (irow < 0) irow = 0;
     247         306 :   Int jrow = row2;
     248         306 :   if (jrow < 0) jrow = vb.nRow()-1;
     249         306 :   DebugAssert(jrow<vb.nRow(),AipsError);
     250             : 
     251             :   // It is not important now to have a separate function for a "block"
     252             :   // operation. Because an appropriate caching is implemented inside
     253             :   // both VisBuffer and this class, changed(vb,row) can be called in the
     254             :   // loop without a perfomance penalty. We preserve this function to keep
     255             :   // the interface intact.
     256             : 
     257         306 :   for (Int ii=irow+1;ii<=jrow;++ii)
     258           0 :        if (changed(vb,ii)) {
     259           0 :            row2 = ii-1;
     260           0 :            return true;
     261             :        }
     262         306 :   return false;
     263             : };
     264             : 
     265             : // as it is stated in BeamSkyJones.h this method may not be useful
     266             : // anymore. Implementing it just in case it is used somewhere.
     267             : // Because an appropriate caching is implemented in both VisBuffer and
     268             : // BeamSkyJones, this method can use BeamSkyJones::changed in a loop
     269           0 : Bool BeamSkyJones::change(const VisBuffer& vb)
     270             : {
     271           0 :   for (Int i=0;i<vb.nRow();++i)
     272           0 :        if (changed(vb,i)) return true;
     273           0 :   return false;
     274             : };
     275             : 
     276         108 : void BeamSkyJones::update(const VisBuffer& vb, Int row)
     277             : {
     278             :   // for debug
     279             :   //cout<<endl<<"BeamSkyJones::update nrow="<<vb.nRow()<<" row="<<row<<" feed1="<<vb.feed1()(0)<<" feed2="<<vb.feed2()(0)<<endl<<endl;
     280             :   //
     281         108 :    if (row<0) row=0;
     282             :   
     283         108 :   lastFieldId_p=vb.fieldId();
     284         108 :   lastArrayId_p=vb.arrayId();
     285         108 :   lastMSId_p=vb.msId();
     286         108 :   lastTime_p=vb.time()(0);
     287         108 :   if(!vbutil_p){
     288          45 :     vbutil_p=new VisBufferUtil(vb);
     289             :   }
     290             :   // The pointing direction depends on feed, antenna, pointing errors, etc  
     291             :   //MDirection pointingDirection1_p = vb.direction1()(row);
     292             :   //MDirection pointingDirection2_p = vb.direction2()(row);
     293         216 :   MDirection pointingDirection1 = vbutil_p->getPointingDir(vb, vb.antenna1()(row), row);
     294         216 :   MDirection pointingDirection2 = vbutil_p->getPointingDir(vb, vb.antenna2()(row), row);
     295             :   // Look up correct telescope
     296         108 :   const MSObservationColumns& msoc=vb.msColumns().observation();
     297         108 :   telescope_p = msoc.telescopeName()(vb.arrayId());
     298             : 
     299         108 :   updatePBMathIndices(vb,row); // lastUpdateIndex?_p are now valid
     300             : 
     301         108 :   if (!lastParallacticAngles_p.nelements() && myPBMaths_p.nelements()) {
     302          45 :        lastParallacticAngles_p.resize(myPBMaths_p.nelements());
     303          45 :        lastParallacticAngles_p.set(1000.); // to force recalculation
     304             :                            // it will recalculate directions as well
     305             :   }
     306         108 :   if (!lastDirections_p.nelements() && myPBMaths_p.nelements()) 
     307          45 :        lastDirections_p.resize(myPBMaths_p.nelements());
     308             :   /*      
     309             :   if (lastUpdateIndex1_p == lastUpdateIndex2_p &&
     310             :       !directionsCloseEnough(pointingDirection1_p,pointingDirection2_p)) {
     311             :         // the case is inhomogeneous: pointing directions are slightly
     312             :         // different at different antennae
     313             :     //This check is an overkill for standard arrays...need to find a better one
     314             : 
     315             :  //     LogIO os;
     316             : //      os << LogIO::WARN << LogOrigin("BeamSkyJones","update")
     317             : //         << "The pointing directions differ for different stations."
     318             : //         << LogIO::POST << LogIO::WARN << LogOrigin("BeamSkyJones","update")
     319             : //         << "This case is not handled correctly. Continuing anyway."<<LogIO::POST;
     320             : //
     321             :     //
     322             :         // we could, in principle, clone a PBMath object for one of the
     323             :         // antennae and rebuild lastDirections_p.
     324             :         // For now, the value for the second antenna will be used
     325             :   }
     326             :   */ 
     327         108 :   if (lastUpdateIndex1_p!=-1)
     328         108 :       lastDirections_p[lastUpdateIndex1_p]=pointingDirection1;
     329             : 
     330         108 :   if (lastUpdateIndex2_p!=-1)
     331         108 :       lastDirections_p[lastUpdateIndex2_p]=pointingDirection2;
     332             :   
     333             :   // Obtaining a reference on parallactic angles is a fast operation as
     334             :   // caching is implemented inside VisBuffer.
     335         108 :   Float feed1_pa=vb.feed1_pa()[row];
     336         108 :   Float feed2_pa=vb.feed2_pa()[row];  
     337             : 
     338         216 :   if (lastUpdateIndex1_p == lastUpdateIndex2_p &&
     339         108 :       abs(abs(feed1_pa-feed2_pa)-parallacticAngleIncrement_p)> 1e-5 ) {
     340             :       // the array is not compact: position angles are significantly
     341             :       // different at different antennae
     342          98 :       LogIO os;
     343             :       //Commenting out this message...more pest than  useful to have it at this low level
     344             :       //    os << LogIO::WARN << LogOrigin("BeamSkyJones","update")
     345             :       //       << "The array is not compact, position angles differ for different stations."
     346             :       //     << LogIO::POST << LogIO::WARN << LogOrigin("BeamSkyJones","update")
     347             :       //      << "Primary beams are not correctly handled if they are asymmetric. Continuing anyway."<<LogIO::POST;
     348             :     // we could, in principle, clone a PBMath object for one of the
     349             :     // antennae and rebuild lastParallacticAngles_p.
     350             :     // For now, the value for the second antenna will be used
     351             :   }
     352         108 :   if (lastUpdateIndex1_p!=-1)
     353         108 :       lastParallacticAngles_p[lastUpdateIndex1_p]=feed1_pa;
     354         108 :   if (lastUpdateIndex2_p!=-1)
     355         108 :       lastParallacticAngles_p[lastUpdateIndex2_p]=feed2_pa;
     356         108 : };
     357             : 
     358           0 : void BeamSkyJones::assure (const VisBuffer& vb, Int row)
     359             : {
     360           0 :   if(changed(vb, row)) update(vb, row);  
     361           0 : };
     362             : 
     363             : 
     364             : ImageInterface<Complex>& 
     365          89 : BeamSkyJones::apply(const ImageInterface<Complex>& in,
     366             :                     ImageInterface<Complex>& out,
     367             :                     const VisBuffer& vb, Int row,
     368             :                     Bool forward)
     369             : {
     370          89 :   if(changed(vb, row)) update(vb, row);
     371          89 :   hasBeenApplied=true;
     372             :   // now lastUpdateIndex?_p are valid
     373             :   
     374             :   
     375             : 
     376          89 :   if (lastUpdateIndex1_p!=lastUpdateIndex2_p) 
     377           0 :       throw(AipsError("BeamSkyJones::apply(Image...) - can only treat homogeneous PB case"));
     378             :   else {
     379             :     // for debug
     380             :     // cout<<endl<<"BeamSkyJones::apply(Image...) index="<<lastUpdateIndex1_p<<" feed="<<vb.feed1()(0)<<" direction=";
     381             :     // printDirection(cout,lastDirections_p[lastUpdateIndex1_p]); cout<<endl<<endl;
     382             :     //
     383         178 :     CoordinateSystem cs=in.coordinates();
     384          89 :     Int coordIndex=cs.findCoordinate(Coordinate::DIRECTION);
     385          89 :     MDirection::Types dirType=cs.directionCoordinate(coordIndex).directionType();
     386          89 :     PBMath myPBMath;    
     387          89 :     if (getPBMath(lastUpdateIndex1_p, myPBMath)) 
     388          89 :       return myPBMath.applyPB(in, out, convertDir(vb, lastDirections_p[lastUpdateIndex1_p], dirType), 
     389         178 :               Quantity(lastParallacticAngles_p[lastUpdateIndex1_p],"rad"),
     390         267 :               doSquint_p, false, threshold(), forward);
     391             :     else 
     392           0 :       throw(AipsError("BeamSkyJones::apply(Image...)!!! - PBMath not found"));
     393             :   }
     394             : }; 
     395             : 
     396             : 
     397             : ImageInterface<Float>& 
     398           0 : BeamSkyJones::apply(const ImageInterface<Float>& in,
     399             :                           ImageInterface<Float>& out,
     400             :                           const VisBuffer& vb, Int row){
     401           0 :   if(changed(vb, row)) update(vb, row);
     402           0 :   hasBeenApplied=true;
     403             :   // now lastUpdateIndex?_p are valid
     404             :   
     405           0 :   if (lastUpdateIndex1_p!=lastUpdateIndex2_p) 
     406           0 :     throw(AipsError("BeamSkyJones::apply(Image...) - can only treat homogeneous PB case"));
     407             :   else {
     408           0 :     PBMath myPBMath; 
     409           0 :     CoordinateSystem cs=in.coordinates();
     410           0 :     Int coordIndex=cs.findCoordinate(Coordinate::DIRECTION);
     411           0 :     MDirection::Types dirType=cs.directionCoordinate(coordIndex).directionType();
     412           0 :     if (getPBMath(lastUpdateIndex1_p, myPBMath)) 
     413           0 :       return myPBMath.applyPB(in, out, convertDir(vb, lastDirections_p[lastUpdateIndex1_p], dirType), 
     414           0 :                               Quantity(lastParallacticAngles_p[lastUpdateIndex1_p],"rad"),
     415           0 :                               doSquint_p, threshold());
     416             :     else 
     417           0 :       throw(AipsError("BeamSkyJones::apply(Image...)!!! - PBMath not found"));
     418             :   }
     419             : 
     420             : }
     421             : ImageInterface<Float>& 
     422           0 : BeamSkyJones::applySquare(const ImageInterface<Float>& in,
     423             :                           ImageInterface<Float>& out,
     424             :                           const VisBuffer& vb, Int row)
     425             : {
     426           0 :   if(changed(vb, row)) update(vb, row);
     427           0 :   hasBeenApplied=true;
     428             :   // now lastUpdateIndex?_p are valid
     429             :   
     430           0 :   if (lastUpdateIndex1_p!=lastUpdateIndex2_p)   
     431           0 :     throw(AipsError("BeamSkyJones::applySquare(Image...) - can only treat homogeneous PB case"));
     432             :   else {
     433             :     // for debug
     434             :     // cout<<endl<<"BeamSkyJones::applySquare(Image...) index="<<lastUpdateIndex1_p<<" feed="<<vb.feed1()(0)<<" direction=";
     435             :     // printDirection(cout,lastDirections_p[lastUpdateIndex1_p]); cout<<endl<<endl;
     436             :     //
     437           0 :     PBMath myPBMath;
     438           0 :     CoordinateSystem cs=in.coordinates();
     439           0 :     Int coordIndex=cs.findCoordinate(Coordinate::DIRECTION);
     440           0 :     MDirection::Types dirType=cs.directionCoordinate(coordIndex).directionType();
     441           0 :     if (getPBMath(lastUpdateIndex1_p, myPBMath)) 
     442           0 :       return myPBMath.applyPB2(in, out,convertDir(vb, lastDirections_p[lastUpdateIndex1_p], dirType), lastParallacticAngles_p[lastUpdateIndex1_p], doSquint_p, threshold()*threshold());
     443             :     else 
     444           0 :       throw(AipsError("BeamSkyJones::applySquare(Image...) - PBMath not found"));    
     445             :   }
     446             : }; 
     447             : 
     448             : 
     449             : SkyComponent& 
     450         397 : BeamSkyJones::apply(SkyComponent& in,
     451             :                     SkyComponent& out,
     452             :                     const VisBuffer& vb, Int row,
     453             :                     Bool forward, Bool fullspectral)
     454             : {
     455         397 :   if(changed(vb, row)) update(vb, row);
     456         397 :   hasBeenApplied=true;
     457             :   // now lastUpdateIndex?_p are valid
     458             :   
     459         397 :   if (lastUpdateIndex1_p!=lastUpdateIndex2_p)
     460           0 :     throw(AipsError("BeamSkyJones::apply(SkyComp...) - can only treat homogeneous PB case"));
     461             :   else { 
     462             :     // for debug
     463             :     // cout<<endl<<"BeamSkyJones::apply(SkyComp...) index="<<lastUpdateIndex1_p<<" feed="<<vb.feed1()(0)<<" direction=";
     464             :     // printDirection(cout,lastDirections_p[lastUpdateIndex1_p]); cout<<endl<<endl;
     465             :     //
     466         397 :     PBMath myPBMath;
     467         397 :     MDirection compdir=in.shape().refDirection();
     468         397 :     MDirection::Types dirType=MDirection::castType(compdir.getRef().getType());
     469         397 :     if (getPBMath(lastUpdateIndex1_p, myPBMath)) {
     470         397 :         if(!fullspectral){
     471           0 :           return myPBMath.applyPB(in, out, convertDir(vb, lastDirections_p[lastUpdateIndex1_p], dirType), 
     472           0 :                                   Quantity(vb.frequency()(0), "Hz"), 
     473           0 :                                   lastParallacticAngles_p[lastUpdateIndex1_p],
     474           0 :                                   doSquint_p, False, threshold(), forward);
     475             :           
     476             :           
     477             :         }
     478             :         else{
     479             :           //Damn people call this with in==out
     480             :           //out=in.copy();
     481         397 :           uInt nchan=vb.frequency().nelements();
     482         794 :           Vector<Flux<Double> > vals(nchan, Flux<Double>(0.0));
     483         794 :           Vector<MVFrequency> fs(nchan);
     484             :           
     485         794 :            Vector<Double> freqs(nchan);
     486             :            Bool conv;
     487         794 :            SkyComponent tmp;
     488         794 :            Vector<DComplex> normFactor;
     489         397 :            normFactor.assign(in.flux().value());
     490         397 :            auto poltype=in.flux().pol();
     491        1985 :            for(size_t k=0; k < normFactor.size(); ++k) {
     492        1588 :              normFactor[k]= abs(normFactor[k]) >0.0 ? 1.0/abs(normFactor[k]) : 1.0;
     493             :            }
     494         397 :            vb.lsrFrequency(vb.spectralWindow(), freqs,  conv);
     495        2888 :            for (uInt k=0; k < nchan; ++k)
     496             :              {
     497        2491 :                tmp=in.copy();
     498        4982 :                PointShape ptshape(in.shape().refDirection());
     499             :                //Assuming 2 sided shape are small compared to beam otherwise
     500             :                // we need to know the pixel size
     501        2491 :                tmp.setShape(ptshape);
     502        7473 :                MVAngle res(Quantity(1, "mas"));
     503        4982 :                auto multFactor=normFactor*(tmp.sample(in.shape().refDirection(), res, res,
     504        7473 :                                                      MFrequency(Quantity(vb.frequency()(k), "Hz"))).value()
     505        4982 :                                            );
     506             :               
     507             :                myPBMath.applyPB(in, tmp,
     508        4982 :                                 convertDir(vb,lastDirections_p[lastUpdateIndex1_p], dirType),
     509        4982 :                                 Quantity(vb.frequency()(k), "Hz"), 
     510        4982 :                                 lastParallacticAngles_p[lastUpdateIndex1_p],
     511        2491 :                                 doSquint_p, False, threshold(), forward
     512        7473 :                                 );
     513        2491 :                Flux<Double> tmpFlux=tmp.flux();
     514        2491 :                tmpFlux.convertPol(poltype);            
     515        2491 :                tmpFlux.setValue(tmpFlux.value()*multFactor);
     516        2491 :                vals[k]=tmpFlux;             
     517        2491 :                fs[k]=MVFrequency(Quantity(freqs(k), "Hz"));
     518             :              
     519             :            }
     520         794 :            CountedPtr<SpectralModel> spModel;
     521         397 :            if(fs.nelements() >1){
     522         242 :              spModel=new TabularSpectrum();
     523         242 :              static_cast<TabularSpectrum *>(spModel.get())->setValues(fs, vals, MFrequency::Ref(MFrequency::LSRK));
     524             :            }
     525             :            else{
     526         155 :               spModel=new ConstantSpectrum();
     527             :            }
     528         397 :            out=tmp.copy();
     529         397 :            spModel->setRefFrequency(MFrequency(fs[nchan-1], MFrequency::LSRK));
     530         397 :            out.setSpectrum(*spModel);
     531             :            
     532             : 
     533             : 
     534             :         }
     535             :       }
     536             :       else 
     537           0 :       throw(AipsError("BeamSkyJones::apply(SkyComponent,...) - PBMath not found"));    
     538             :   }
     539         397 :   return out;
     540             : }; 
     541             : 
     542             : 
     543             : SkyComponent& 
     544           0 : BeamSkyJones::applySquare(SkyComponent& in,
     545             :                     SkyComponent& out,
     546             :                           const VisBuffer& vb, Int row, Bool /*fullspectral*/)
     547             : {
     548           0 :   if(changed(vb, row)) update(vb, row);
     549           0 :   hasBeenApplied=true;
     550             :   // now lastUpdateIndex?_p are valid
     551             :   
     552           0 :   if (lastUpdateIndex1_p!=lastUpdateIndex2_p)   
     553           0 :     throw(AipsError("BeamSkyJones::applySquare(SkyComponent,...) - can only treat homogeneous PB case"));
     554             :   else { 
     555           0 :     PBMath myPBMath;
     556           0 :      MDirection compdir=in.shape().refDirection();
     557           0 :     MDirection::Types dirType=MDirection::castType(compdir.getRef().getType());
     558           0 :     if (getPBMath(lastUpdateIndex1_p, myPBMath))
     559           0 :       return myPBMath.applyPB2(in, out, convertDir(vb, lastDirections_p[lastUpdateIndex1_p], dirType), 
     560           0 :                                Quantity(vb.frequency()(0), "Hz"), 
     561           0 :                                lastParallacticAngles_p[lastUpdateIndex1_p],
     562           0 :                                doSquint_p);
     563             :     else 
     564           0 :       throw(AipsError("BeamSkyJones::applySquare(SkyComponent,...) - PBMath not found"));
     565             :   }
     566             : }; 
     567             : 
     568             : // Apply gradient
     569             : ImageInterface<Complex>&
     570           0 : BeamSkyJones::applyGradient(ImageInterface<Complex>& result,
     571             :                           const VisBuffer&,
     572             :                           Int)
     573             : {  
     574           0 :   return result;
     575             : };
     576             : 
     577             : 
     578           0 : void BeamSkyJones::initializeGradients()
     579             : {
     580           0 : };
     581             : 
     582           0 : void BeamSkyJones::finalizeGradients()
     583             : {
     584           0 : };
     585             : 
     586             : 
     587             : SkyComponent&
     588           0 : BeamSkyJones::applyGradient(SkyComponent& result, const VisBuffer&,
     589             :                           Int) 
     590             : {  
     591           0 :   return result;
     592             : };
     593             : 
     594           0 : void BeamSkyJones::addGradients(const VisBuffer&, Int,
     595             :                               const Float, 
     596             :                               const Float,
     597             :                               const Matrix<Complex>&, 
     598             :                               const Matrix<Float>&) 
     599           0 : {};
     600             : 
     601             : // Solve
     602           0 : Bool BeamSkyJones::solve (SkyEquation&) 
     603             : {
     604           0 :   return false;
     605             : };
     606             : 
     607             : // return index of compareTelescope, compareAntenna and compareFeed in
     608             : // myTelescopes_p; -1 if not found
     609             : // if compareAntenna or compareTelescope is -1, this means that the
     610             : // PBMath class is the same for all antennae/feeds. An exception will
     611             : // be raised, if separate PBMath objects have been assigned by setPBMath
     612             : // for different feeds/antennae but -1 is used for query.
     613             : //
     614             : // It would be good to rename this function to indexBeams as this name
     615             : // is more appropriate. 
     616             : //
     617         306 : Int BeamSkyJones::indexTelescope(const String &compareTelescope,
     618             :                      const Int &compareAntenna, const Int &compareFeed) const
     619             : {
     620             :   // for debugging
     621             :   //cout<<endl<<"BeamSkyJones::indexTelescope tel="<<compareTelescope<<" ant="<<compareAntenna<<" feed="<<compareFeed<<endl<<endl;
     622             :   //cout<<"Currently "<<myTelescopes_p.nelements()<<" models have been set"<<endl;
     623             :   //for (uInt i=0; i<myTelescopes_p.nelements(); ++i) 
     624             :   //     cout<<i<<" telescope: "<<myTelescopes_p[i]<<" ant:" <<
     625             :   //         myAntennaIDs_p[i]<<" feed: "<<myFeedIDs_p[i]<<endl;
     626             :   //         
     627             :              
     628         306 :   DebugAssert(myTelescopes_p.nelements()==myAntennaIDs_p.nelements(),
     629             :               AipsError);
     630         306 :   DebugAssert(myTelescopes_p.nelements()==myFeedIDs_p.nelements(),
     631             :               AipsError);             
     632         306 :   for (uInt i=0; i<myTelescopes_p.nelements(); ++i) 
     633         216 :        if (myTelescopes_p[i] == compareTelescope) {
     634         216 :            if (compareAntenna==myAntennaIDs_p[i] &&
     635           0 :                compareFeed==myFeedIDs_p[i]) return i; // -1 will also work
     636         216 :            if (compareAntenna==myAntennaIDs_p[i]) {
     637           0 :                if (compareFeed==-1)
     638             :                    throw AipsError("BeamSkyJones::indexTelescope: separate beam models"
     639           0 :                       "have been set up for different feeds and a common model is requested");
     640           0 :                if (myFeedIDs_p[i]==-1) return i; // valid for all feeds and a given antenna                   
     641             :            }
     642         216 :            if (compareFeed==myFeedIDs_p[i]) {
     643           0 :                if (compareAntenna==-1)
     644             :                    throw AipsError("BeamSkyJones::indexTelescope: separate beam models"
     645           0 :                        "have been set up for different antennae and a common model is requested");
     646           0 :                if (myAntennaIDs_p[i]==-1) return i; // valid for all antennae and a given feed       
     647             :            }
     648         216 :            if (myFeedIDs_p[i]==-1 && myAntennaIDs_p[i]==-1)
     649         216 :                return i; // valid for all antennae and feeds
     650             :            
     651             :        }  
     652          90 :   return -1;
     653             : };
     654             : 
     655             : // get the PBMath object; returns false if that one doesn't exist,
     656             : // true if it does exist and is OK
     657             : // antennaID and feedID default to -1 to preserve the old interface
     658             : // TODO: change the interface and make antennaID and feedID the
     659             : // second and third parameter respectively to have a better looking code
     660             : 
     661           0 : Bool BeamSkyJones::getPBMath(const String &telescope, PBMath &myPBMath,
     662             :                  const Int &antennaID, const Int &feedID) const
     663             : {
     664           0 :   Int indTel = indexTelescope(telescope,antennaID,feedID);
     665           0 :   if (indTel >= 0) 
     666           0 :     return getPBMath((uInt)indTel, myPBMath);
     667             :    else 
     668           0 :     return false;  // PBMath not found for this telescope/antenna/feed combination
     669             :   
     670             : };
     671             : 
     672         532 : Bool BeamSkyJones::getPBMath(uInt whichAnt, PBMath &myPBMath) const
     673             : {
     674         532 :   if (whichAnt <  myPBMaths_p.nelements() && Int(whichAnt)>=0) {
     675         532 :     if (myPBMaths_p[whichAnt].ok()) {
     676         532 :       myPBMath = myPBMaths_p[whichAnt];
     677         532 :       return true;
     678             :     } else 
     679           0 :       return false;  // whichAnt's PBMath found but not valid    
     680             :   } else 
     681           0 :     return false;  // whichAnt's PBMath not found
     682             :   
     683             : };
     684             : 
     685             : // set the PB based on telescope name, antennaID and feedID
     686             : // If antennaID or feedID is -1, the PBMath object is set for
     687             : // all antennae or feeds, respectively. These are the default
     688             : // values to retain the previous interface.
     689             : //
     690             : // Note. It would be nice to change the interface and make antennaID
     691             : // and feedID the second and the third parameter, respectively.
     692          45 : void BeamSkyJones::setPBMath(const String &telescope, PBMath &myPBMath,
     693             :                 const Int &antennaID, const Int &feedID)
     694             : {
     695             :    // for debug
     696             :    // cout<<endl<<"BeamSkyJones::setPBMath tel="<<telescope<<" ant="<<antennaID<<" feed="<<feedID<<endl<<endl;
     697             :    //
     698             :    
     699          45 :    DebugAssert(myTelescopes_p.nelements()==myAntennaIDs_p.nelements(),
     700             :                AipsError);
     701          45 :    DebugAssert(myTelescopes_p.nelements()==myFeedIDs_p.nelements(),
     702             :                AipsError);            
     703          45 :    DebugAssert(myTelescopes_p.nelements()==myPBMaths_p.nelements(),
     704             :                AipsError);
     705             : 
     706          45 :    Bool doRemove=false;
     707          45 :    if (antennaID==-1 || feedID==-1) 
     708             :      // we have to remove PBMaths for individual antennae/feeds, if they     
     709             :      // were assigned earlier
     710          45 :      for (uInt i=0; i<myTelescopes_p.nelements(); ++i) {
     711           0 :           if (doRemove) {
     712             :               // we have to step back because the previous element
     713             :               // has been removed
     714           0 :               --i;
     715           0 :               doRemove=false;
     716           0 :               DebugAssert(i<myTelescopes_p.nelements(), AipsError);
     717             :           }
     718           0 :           if (myTelescopes_p[i] == telescope) {       
     719           0 :               if (myAntennaIDs_p[i]==-1 && antennaID==-1 &&
     720           0 :                   myFeedIDs_p[i]==-1 && feedID==-1)
     721           0 :                      continue;  // to speed things up
     722           0 :               if ((myAntennaIDs_p[i]!=-1) && (antennaID==-1))
     723             :                 {
     724           0 :                   if (myFeedIDs_p[i]!=-1) myAntennaIDs_p[i]=-1;
     725             :                       // now it's valid for all antennae and a given feed
     726             :                       // and will be replaced later
     727           0 :                   else doRemove=true;
     728             :                 }
     729           0 :               if ((myFeedIDs_p[i]!=-1) && (feedID==-1))
     730             :                 {
     731           0 :                   if (myAntennaIDs_p[i]!=-1) myFeedIDs_p[i]=-1;
     732             :                       // now it's valid for all feeds at a given antenna
     733             :                       // and will be replaced later
     734           0 :                   else doRemove=true;
     735             :                 }
     736           0 :               if (doRemove) {
     737           0 :                   myTelescopes_p.remove(i,false);
     738           0 :                   myAntennaIDs_p.remove(i,false);
     739           0 :                   myFeedIDs_p.remove(i,false);
     740           0 :                   myPBMaths_p.remove(i,false);
     741           0 :                   if (lastParallacticAngles_p.nelements())
     742           0 :                       lastParallacticAngles_p.remove(i,false);
     743           0 :                   if (lastDirections_p.nelements())
     744           0 :                       lastDirections_p.remove(i,false);
     745             :               }
     746             :           }
     747             :      }
     748             :   // there should be no exception at this stage because all bad elements
     749             :   // should be removed by the code above
     750          45 :   Int ind = indexTelescope(telescope,antennaID,feedID);
     751          45 :   if (ind < 0) {
     752          45 :     ind = myPBMaths_p.nelements();
     753          45 :     myPBMaths_p.resize(ind+1);
     754          45 :     myTelescopes_p.resize(ind+1);
     755          45 :     myTelescopes_p[ind] = telescope;
     756          45 :     myAntennaIDs_p.resize(ind+1);
     757          45 :     myAntennaIDs_p[ind] = antennaID;
     758          45 :     myFeedIDs_p.resize(ind+1);
     759          45 :     myFeedIDs_p[ind] = feedID;
     760          45 :     if (lastParallacticAngles_p.nelements())
     761           0 :         lastParallacticAngles_p.resize(ind+1);
     762          45 :     if (lastDirections_p.nelements())
     763           0 :         lastDirections_p.resize(ind+1);
     764             :   }
     765          45 :   myPBMaths_p[ind] = myPBMath;
     766          45 :   if (lastParallacticAngles_p.nelements())
     767           0 :       lastParallacticAngles_p[ind]=1000.; // to force
     768             :                                           // recalculation (it is >> 2pi)
     769          45 : };
     770             : 
     771        2580 : MDirection BeamSkyJones::convertDir(const VisBuffer& vb, const MDirection& inDir, const MDirection::Types outType){
     772             : 
     773             : 
     774        2580 :   if(MDirection::castType(inDir.getRef().getType())==outType){
     775        2580 :     return inDir;
     776             :   }
     777           0 :    MPosition pos;
     778           0 :    String tel("");
     779           0 :    if (vb.msColumns().observation().nrow() > 0) {
     780           0 :      tel = vb.msColumns().observation().telescopeName()(vb.msColumns().observationId()(0));
     781             :    }
     782           0 :    if (tel.length() == 0 || !tel.contains("VLA") ||
     783           0 :        !MeasTable::Observatory(pos,tel)) {
     784             :      // unknown observatory, use first antenna
     785           0 :      Int ant1=vb.antenna1()(0);
     786           0 :      pos=vb.msColumns().antenna().positionMeas()(ant1);
     787             :    }
     788           0 :    MEpoch::Types timeMType=MEpoch::castType(vb.msColumns().timeMeas()(0).getRef().getType());
     789           0 :    Unit timeUnit=Unit(vb.msColumns().timeMeas().measDesc().getUnits()(0).getName());
     790           0 :    MEpoch timenow(Quantity(vb.time()(0), timeUnit), timeMType);
     791           0 :     MeasFrame mFrame(timenow, pos);
     792           0 :     MDirection::Ref elRef(outType, mFrame);
     793           0 :     return MDirection::Convert(inDir, elRef)();
     794             : }
     795             : 
     796             : 
     797           0 : Bool BeamSkyJones::isHomogeneous() const
     798             : {
     799             :   // Hogwash!  our "myPBMath_p/myTelescope_p scheme only deals
     800             :   // with homogeneous pointings.  Need to fix this!
     801             :   // Wait for MS-II
     802           0 :   return true;
     803             : };
     804             : 
     805             : 
     806             : ImageRegion*  
     807           0 : BeamSkyJones::extent (const ImageInterface<Complex>& im, 
     808             :                       const VisBuffer& vb,  
     809             :                       const Int row,    
     810             :                       const Float fPad,  
     811             :                       const Int iChan, 
     812             :                       const SkyJones::SizeType sizeType)
     813             : {
     814           0 :   if(changed(vb, row))  update(vb, row);
     815           0 :   DebugAssert(lastUpdateIndex1_p>=0,AipsError); // should be checked in changed/update
     816             :   
     817           0 :   PBMath myPBMath;
     818           0 :   if (getPBMath(lastUpdateIndex1_p, myPBMath)) {
     819           0 :     return myPBMath.extent(im, lastDirections_p[lastUpdateIndex1_p], row, fPad, iChan, sizeType);
     820             :   } else {
     821           0 :     throw(AipsError("BeamSkyJones::extent() - PBMath not found"));
     822             :   }   
     823             : };
     824             : 
     825             : ImageRegion*  
     826           0 : BeamSkyJones::extent (const ImageInterface<Float>& im, 
     827             :                       const VisBuffer& vb,  
     828             :                       const Int row,
     829             :                       const Float fPad,  
     830             :                       const Int iChan,
     831             :                       const SkyJones::SizeType sizeType)
     832             : { 
     833           0 :   if(changed(vb, row)) update(vb, row);
     834           0 :   DebugAssert(lastUpdateIndex1_p>=0,AipsError); // should be checked in changed/update
     835             :   
     836           0 :   PBMath myPBMath;
     837           0 :   if (getPBMath(lastUpdateIndex1_p, myPBMath)) {
     838           0 :     return myPBMath.extent(im, lastDirections_p[lastUpdateIndex1_p], row, fPad, iChan, sizeType);
     839             :   } else {
     840           0 :     throw(AipsError("BeamSkyJones::extent() - PBMath not found"));
     841             :   }   
     842             : };
     843             : 
     844          46 : Int BeamSkyJones::support(const VisBuffer& vb, const CoordinateSystem& cs){
     845          92 :   PBMath myPBMath;
     846             : 
     847          46 :   if(changed(vb, 0)) update(vb, 0);
     848          46 :   if (getPBMath(lastUpdateIndex1_p, myPBMath)) {
     849          92 :     return myPBMath.support(cs);
     850             :   } else {
     851           0 :     throw(AipsError("BeamSkyJones::support() - PBMath not found"));
     852             :   }
     853             : 
     854             : }
     855             : 
     856          17 : void BeamSkyJones::summary(Int n) 
     857             : {
     858          17 :   uInt nPBs = myPBMaths_p.nelements();
     859          51 :   LogIO os(LogOrigin("BeamSkyJones", "summary"));
     860          17 :   os << "Beam Summary: "<< LogIO::POST;
     861          34 :   for (uInt i=0; i< nPBs; ++i) {
     862          34 :     String pbclass;
     863          17 :     myPBMaths_p[i].namePBClass(pbclass);
     864          34 :     os << "Model " << i+1 << " for " << myTelescopes_p[i] <<" ant="<<
     865          68 :           myAntennaIDs_p[i]<<" feed="<<myFeedIDs_p[i]<< " uses PB: "
     866          17 :        << pbclass << LogIO::POST;
     867          17 :     if (n >=0) {
     868          17 :       myPBMaths_p[i].summary(n);
     869             :     }
     870             :   }
     871          17 : };
     872             : 
     873             : } //# NAMESPACE CASA - END
     874             : 

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