PagedImage.h

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//# PagedImage.h: read, store and manipulate astronomical images
//# Copyright (C) 1994,1995,1996,1997,1998,1999,2000,2001,2003
//# Associated Universities, Inc. Washington DC, USA.
//#
//# This library is free software; you can redistribute it and/or modify it
//# under the terms of the GNU Library General Public License as published by
//# the Free Software Foundation; either version 2 of the License, or (at your
//# option) any later version.
//#
//# This library is distributed in the hope that it will be useful, but WITHOUT
//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
//# FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Library General Public
//# License for more details.
//#
//# You should have received a copy of the GNU Library General Public License
//# along with this library; if not, write to the Free Software Foundation,
//# Inc., 675 Massachusetts Ave, Cambridge, MA 02139, USA.
//#
//# Correspondence concerning AIPS++ should be addressed as follows:
//#        Internet email: aips2-request@nrao.edu.
//#        Postal address: AIPS++ Project Office
//#                        National Radio Astronomy Observatory
//#                        520 Edgemont Road
//#                        Charlottesville, VA 22903-2475 USA
//#
//# $Id: PagedImage.h 20505 2009-01-19 14:37:24Z gervandiepen $

#ifndef IMAGES_PAGEDIMAGE_H
#define IMAGES_PAGEDIMAGE_H


//# Includes
#include <images/Images/ImageInterface.h>
#include <lattices/Lattices/PagedArray.h>
#include <tables/Tables/Table.h>
#include <casa/Utilities/DataType.h>
#include <tables/Tables/TableRecord.h>

//# Forward Declarations
#include <casa/iosfwd.h>

namespace casa { //# NAMESPACE CASA - BEGIN

// <summary>
// Read, store, and manipulate astronomical images.
// </summary>

// <use visibility=export>

// <reviewed reviewer="" date="" tests="tPagedmage.cc" demos="dPagedImage.cc">
// </reviewed>

// <prerequisite>
//   <li> <linkto class=CoordinateSystem>CoordinateSystem</linkto>
//   <li> <linkto class=ImageInterface>ImageInterface</linkto>
//   <li> <linkto class=Lattice>Lattice</linkto>
//   <li> <linkto class=LatticeIterator>LatticeIterator</linkto>
//   <li> <linkto class=LatticeNavigator>LatticeNavigator</linkto>
//   <li> <linkto class=ImageRegion>ImageRegion</linkto>
// </prerequisite>

// <etymology>
// The PagedImage name comes from its role as the Image class with paging 
// from persistent memory.  Users are thus invited to treat the 
// PagedImage instances like AIPS++ Lattices  
// </etymology>

// <synopsis> 
// All AIPS++ Images are Lattices.  They may be treated like any other Lattice;
// getSlice(...), putSlice(...), LatticeIterator for iterating, etc.
// ArrayImages contain a map, a mask for that map, and coordinate 
// information.  This provides a Lattice interface for images and their 
// respective coordinates.  Additional functionality is defined by the 
// ImageInterface class. 
//
// You can use the global function <src>imagePixelType</src> to determine
// what the pixel type of an image is before you open the image if your
// code can work with Images of many possible types, or for error checking.
//
// </synopsis> 

// <example>
// This example shows how to create a mask for an image, fill it, and
// make it known to the image.
// <srcblock>
//   // Open the image (as readonly for the moment).
//   PagedImage<Float> myimage ("image.name");
//   // Create a mask for the image.
//   // The mask will be stored in a subtable of the image.
//   LCPagedMask mask (RegionHandler::makeMask (myimage, "mask.name"));
//   // Fill the mask with whatever values (e.g. all True).
//   mask.set (True);
//   // Make the mask known to the image (with name mask1).
//   myimage.defineRegion ("mask1", mask, RegionHandler::Masks);
//   // Make the mask the default mask for this image.
//   myimage.setDefaultMask ("mask1");
// </srcblock>
// It is possible to create as many masks as one likes. They can all
// be defined as masks for the image (with different names, of course).
// However, only one of them can be the default mask (the mask used
// by default when the image is opened). When another mask has to be
// used, one can do two things:
// <ul>
//  <li> Use setDefaultMask to make the other mask the default mask.
//   This is advisable when the change should be more or less permanent.
//  <li> Open the PagedImage without using a default mask. Thereafter
//   a <linkto class=SubImage>SubImage</linkto> object can be created
//   from the PagedImage and the mask. This is advisable when it the
//   mask has to be used only one time.
// </ul>
// </example>

// <motivation>
// The size of astronomical data can be very large.  The ability to fit an 
// entire image into random access memory cannot be guaranteed.  Paging from 
// disk pieces of the image appeared to be the way to deal with this problem.
// </motivation>

//
// <note>
//  When you make a new PagedImage, and you are transferring
//  information from some other PagedImage, be aware that you
//  must copy, manually, things like miscInfo, imageInfo, units,
//  logSink (history) to the new file.
// </note>
// <todo asof="1996/09/04">
//   <li> The CoordinateSystem::store() function returns a TableRecord.  That
// TableRecord should be stored in the same row as our image.  This will 
// allow ImageStack members to have their own coordinate frames.
// </todo>


template <class T> class PagedImage: public ImageInterface<T>
{
public: 
  // Construct a new Image from shape and coordinate information.
  // Data will be stored in the argument table.
  PagedImage (const TiledShape& mapShape,
              const CoordinateSystem& coordinateInfo,
              Table& table,
              uInt rowNumber = 0);
  
  // Construct a new Image from shape and coordinate information. Table
  // will be stored in the named file.
  PagedImage (const TiledShape& mapShape,
              const CoordinateSystem& coordinateInfo,
              const String& nameOfNewFile,
              uInt rowNumber = 0);
  
  // Construct a new Image from shape and coordinate information. Table
  // will be stored in the named file.
  // The lock options may be specified
  // <group>
  PagedImage (const TiledShape& mapShape,
              const CoordinateSystem& coordinateInfo,
              const String& nameOfNewFile,
              TableLock::LockOption,
              uInt rowNumber = 0);
  PagedImage (const TiledShape& mapShape,
              const CoordinateSystem& coordinateInfo,
              const String& nameOfNewFile,
              const TableLock& lockOptions,
              uInt rowNumber = 0);
  // </group>
  
  // Reconstruct an image from a pre-existing file.
  // By default the default pixelmask (if available) is used.
  explicit PagedImage (Table& table, MaskSpecifier = MaskSpecifier(),
                       uInt rowNumber = 0);
  
  // Reconstruct an image from a pre-existing file.
  // By default the default pixelmask (if available) is used.
  explicit PagedImage (const String& filename, MaskSpecifier = MaskSpecifier(),
                       uInt rowNumber = 0);
  
  // Reconstruct an image from a pre-existing file with Locking.
  // By default the default pixelmask (if available) is used.
  // <group>
  PagedImage (const String& filename, TableLock::LockOption,
              MaskSpecifier = MaskSpecifier(), uInt rowNumber = 0);
  PagedImage (const String& filename, const TableLock& lockOptions,
              MaskSpecifier = MaskSpecifier(), uInt rowNumber = 0);
  // </group>
  
  // Copy constructor (reference semantics).
  PagedImage (const PagedImage<T>& other);

  ~PagedImage();
  
  // Assignment operator (reference semantics).
  PagedImage<T>& operator= (const PagedImage<T>& other);
  
  // Make a copy of the object (reference semantics).
  virtual ImageInterface<T>* cloneII() const;

  // Get the image type (returns name of derived class).
  virtual String imageType() const;

  static String className();

  // A PagedImage is always persistent.
  virtual Bool isPersistent() const;

  // A PagedImage is always paged to disk.
  virtual Bool isPaged() const;

  // Is the PagedImage writable?
  virtual Bool isWritable() const;

  // Does the image object use a pixelmask?
  virtual Bool hasPixelMask() const;

  // Get access to the pixelmask used.
  // An exception is thrown if the image does not use a pixelmask.
  // <group>
  virtual const Lattice<Bool>& pixelMask() const;
  virtual Lattice<Bool>& pixelMask();
  // </group>

  // Get a pointer the default pixelmask object used with this image.
  // It returns 0 if no default pixelmask is used.
  virtual const LatticeRegion* getRegionPtr() const;

  // Set the default pixelmask to the mask with the given name
  // (which has to exist in the "masks" group).
  // If the image table is writable, the setting is persistent by writing
  // the name as a keyword.
  // If the given regionName is the empty string,
  // the default pixelmask is unset.
  virtual void setDefaultMask (const String& maskName);

  // Use the mask as specified.
  // If a mask was already in use, it is replaced by the new one.
  virtual void useMask (MaskSpecifier = MaskSpecifier());

  // Function to change the name of the Table file on disk.
  // PagedImage is given a file name at construction time.  You may change
  // that name here.
  void rename (const String& newName);

  // Return the current Table name. By default this includes the full path. 
  // the path preceding the file name can be stripped off on request.
  virtual String name (Bool stripPath=False) const;

  // Return the current TableColumn row number.
  uInt rowNumber() const;

  // Return the shape of the image.
  virtual IPosition shape() const;

  // Change the shape of the image (N.B. the data is thrown away).
  virtual void resize (const TiledShape& newShape);

  // Function which extracts an array from the map.
  virtual Bool doGetSlice (Array<T>& buffer, const Slicer& theSlice);
  
  // Function to replace the values in the map with soureBuffer.
  virtual void doPutSlice (const Array<T>& sourceBuffer,
                           const IPosition& where,
                           const IPosition& stride);

  // Replace every element, x, of the lattice with the result of f(x).
  // you must pass in the address of the function -- so the function
  // must be declared and defined in the scope of your program.  
  // Both versions of apply require a function that accepts a single 
  // argument of type T (the Lattice template actual type) and returns
  // a result of the same type.  The first apply expects a function with
  // an argument passed by value; the second expects the argument to
  // be passed by const reference.  The first form ought to run faster
  // for the built-in types, which may be an issue for large Lattices
  // stored in memory, where disk access is not an issue.
  // <group>
  virtual void apply (T (*function)(T));
  virtual void apply (T (*function)(const T& ));
  virtual void apply (const Functional<T,T>& function);
  // </group>

  // Add a lattice to this image.
  PagedImage<T>& operator+= (const Lattice<T>& other);

  // Function which sets the units associated with the image
  // pixels (i.e. the "brightness" unit). <src>setUnits()</src> returns
  // False if it cannot set the unit for some reason (e.g. the underlying
  // file is not writable).
  virtual Bool setUnits (const Unit& newUnits);

  // Return the table holding the data.
  Table& table()
    { return map_p.table(); }

  // Flushes the new coordinate system to disk if the table is writable.
  virtual Bool setCoordinateInfo (const CoordinateSystem& coords);

  // Check for symmetry in data members.
  virtual Bool ok() const;

  // These are the true implementations of the paran operator.
  // <note> Not for public use </note>
  // <group>
  virtual T getAt (const IPosition& where) const;
  virtual void putAt (const T& value, const IPosition& where);
  // </group>

  // Replace the miscinfo in the PagedImage.
  // It can fail if, e.g., the underlying table is not writable.
  virtual Bool setMiscInfo (const RecordInterface& newInfo);

  // The ImageInfo object contains some miscellaneous information about the
  // image, which unlike that stored in MiscInfo, has a standard list of
  // things, such as the restoring beam.
  // Note that setImageInfo REPLACES the information with the new information.
  // It can fail if, e.g., the underlying table is not writable.
  virtual Bool setImageInfo(const ImageInfo& info);

  // Remove a region/mask belonging to the image from the given group
  // (which can be Any).
  // If a mask removed is the default mask, the image gets unmasked.
  // <br>Optionally an exception is thrown if the region does not exist.
  virtual void removeRegion (const String& name,
                             RegionHandler::GroupType = RegionHandler::Any,
                             Bool throwIfUnknown = True);

  // This is the implementation of the letter for the envelope Iterator
  // class. <note> Not for public use </note>.
  virtual LatticeIterInterface<T>* makeIter
                                 (const LatticeNavigator& navigator,
                                  Bool useRef) const;

  // Returns the maximum recommended number of pixels for a cursor. This is
  // the number of pixels in a tile. 
  virtual uInt advisedMaxPixels() const;

  // Help the user pick a cursor for most efficient access.
  virtual IPosition doNiceCursorShape (uInt maxPixels) const;

  // Maximum size - not necessarily all used. In pixels.
  virtual uInt maximumCacheSize() const;

  // Set the maximum (allowed) cache size as indicated.
  virtual void setMaximumCacheSize (uInt howManyPixels);

  // Set the cache size as to "fit" the indicated path.
  virtual void setCacheSizeFromPath (const IPosition& sliceShape,
                                     const IPosition& windowStart,
                                     const IPosition& windowLength,
                                     const IPosition& axisPath);
    
  // Set the actual cache size for this Array to be be big enough for the
  // indicated number of tiles. This cache is not shared with PagedArrays
  // in other rows and is always clipped to be less than the maximum value
  // set using the setMaximumCacheSize member function.
  // tiles. Tiles are cached using a first in first out algorithm. 
  virtual void setCacheSizeInTiles (uInt howManyTiles);

  // Clears and frees up the caches, but the maximum allowed cache size is 
  // unchanged from when setCacheSize was called
  virtual void clearCache();

  // Report on cache success.
  virtual void showCacheStatistics (ostream& os) const;

  // Handle the (un)locking.
  // Unlocking also unlocks the logtable and a possible mask table.
  // Locking only locks the image itself.
  // <group>
  virtual Bool lock (FileLocker::LockType, uInt nattempts);
  virtual void unlock();
  virtual Bool hasLock (FileLocker::LockType) const;
  // </group>

  // Resynchronize the PagedImage object with the table contents.
  // The logtable and possible mask table are also synchronized if
  // they do not have a readlock.
  // <br>This function is only useful if no read-locking is used, ie.
  // if the table lock option is UserNoReadLocking or AutoNoReadLocking.
  // In that cases the table system does not acquire a read-lock, thus
  // does not synchronize itself automatically.
  virtual void resync();

  // Flush the data.
  virtual void flush();

  // Close the Image and associated files temporarily.
  // It'll be reopened automatically when needed or when
  // <src>reopen</src> is called explicitly.
  virtual void tempClose();

  // If needed, reopen a temporarily closed Image.
  virtual void reopen();

private:
  // Function to return the internal Table object to the RegionHandler.
  static Table& getTable (void* imagePtr, Bool writable);

  // This must be called in every constructor and place where the image
  // is attached to a new image.
  void attach_logtable();
  void open_logtable();
  void restoreUnits (const TableRecord& rec);
  void restoreMiscInfo (const TableRecord& rec);
  void restoreImageInfo (const TableRecord& rec);
  void restoreAll (const TableRecord& rec);

  void check_conformance (const Lattice<T>& other);
  void reopenRW();
  void setTableType();
  void applyMaskSpecifier (const MaskSpecifier&);
  void applyMask (const String& maskName);
  void makePagedImage (const TiledShape& mapShape,
                       const CoordinateSystem& coordinateInfo,
                       const String& nameOfNewFile,
                       const TableLock& lockOptions,
                       uInt rowNumber);
  void makePagedImage (const String& filename, const TableLock& lockOptions,
                       const MaskSpecifier&, uInt rowNumber);

  const Table& table() const
    { return const_cast<PagedImage<T>*>(this)->table(); }


  PagedArray<T>  map_p;
  LatticeRegion* regionPtr_p;
  const static String _className;

  //# Make members of parent class known.
public:
  using ImageInterface<T>::logSink;
  using ImageInterface<T>::logger;
  using ImageInterface<T>::imageInfo;
  using ImageInterface<T>::coordinates;
  using ImageInterface<T>::getDefaultMask;
  using ImageInterface<T>::hasRegion;
  using ImageInterface<T>::getImageRegionPtr;
protected:
  using ImageInterface<T>::setCoordsMember;
  using ImageInterface<T>::setMiscInfoMember;
  using ImageInterface<T>::setLogMember;
  using ImageInterface<T>::setUnitMember;
  // using ImageInterface<T>::setImageInfoMember;
};


//# A nasty - the column name is hard-coded into this function, needs to
//# be centralized somewhere.
// Determine the pixel type in the PagedImage contained in
// <src>fileName</src>.  If the file doesn't appear to be a Table or cannot
// be opened, TpOther is returned.
// <group name="pixeltype")
    DataType imagePixelType(const String& fileName);
// </group>





} //# NAMESPACE CASA - END

#ifndef CASACORE_NO_AUTO_TEMPLATES
#include <images/Images/PagedImage.tcc>
#endif //# CASACORE_NO_AUTO_TEMPLATES
#endif