Class for parsing a file which holds initial estimates for 1-D components. Used by ImageProfileFitter. More...

#include <ProfileFitterEstimatesFileParser.h>

Public Member Functions
	ProfileFitterEstimatesFileParser (const String &filename)
	Constructor `filename` Name of file containing estimates `image` Image for which the estimates apply.
	~ProfileFitterEstimatesFileParser ()
SpectralList	getEstimates () const
	Get the estimates specified in the file as a ComponentList object.
vector< String >	getFixed () const
	Get the fixed parameter masks specified in the file.
String	getContents () const
	Get the contents of the file.
Private Member Functions
void	_parseFile (const RegularFile &myFile)
	parse the file
void	_createSpectralList ()
Private Attributes
SpectralList	_spectralList
vector< String >	_fixedValues
LogIO	_log
vector< Double >	_peakValues
vector< Double >	_centerValues
vector< Double >	_fwhmValues
String	_contents
Static Private Attributes
static const String	_class

Detailed Description

Class for parsing a file which holds initial estimates for 1-D components. Used by ImageProfileFitter.

Intended use:

Public interface

Review Status

Test programs:: tProfileFitterEstimatesFileParser

Prerequisite

FilebufIO class

Synopsis

Used for reading files containing initial estimates of models for 1-D fitting. The expected format is:

Lines with a "#" in column 1 are treated as comments and ignored.
Each non-comment line is treated as a complete set of three comma-delimited parameters for specifying an estimate for a gaussian component. The values are peak in image units (double), pixel position of center (double), and FWHM in pixels (double)
Optionally, a gaussian component estimate line can have a fourth parameter which is a string specifying which of the parameters for that component should be held fixed during the fit. This string can include any combination of the following identifiers: "p" peak, "c" center position, "f" FWHM. So, eg, "cp" means hold the center and peak constant during the fit.

If the specified file passed to the constructor does not exist, an exception is thrown. Parsing is done during object construction and an exception is thrown if the file does not have the expected format.

Example

      ProfileFitterEstimatesFilebFileReader reader("myEstimates.txt", myImage);
      SpectralList sl = reader.getEstimates();
      vector<String> fixed = reader.getFixed();

Definition at line 80 of file ProfileFitterEstimatesFileParser.h.