#include <FlagAgentClipping.h>

Inheritance diagram for casa::FlagAgentClipping:

Public Member Functions
	FlagAgentClipping (FlagDataHandler *dh, casacore::Record config, casacore::Bool writePrivateFlagCube=false, casacore::Bool flag=true)

	~FlagAgentClipping ()

Public Member Functions inherited from casa::FlagAgentBase
	FlagAgentBase (FlagDataHandler *dh, casacore::Record config, casacore::uShort iterationApproach, casacore::Bool writePrivateFlagCube=false, casacore::Bool flag=true)

virtual	~FlagAgentBase ()

void	start ()

void	terminate ()

void	queueProcess ()

void	chunkSummary ()

void	tableSummary ()

void	completeProcess ()

void *	run ()

void	setProfiling (bool enable)
	Set function to activate profiling. More...

void	setCheckMode (bool enable)
	Set function to activate check mode. More...

virtual FlagReport	getReport ()
	Get a report casacore::Record from the agent, at the end of the run The report returned by getReport() can be of multiple types – a single report of type "none" : FlagReport("none",agentName_p) – a single report of type "plot" : FlagReport("plot",agentName_p) – a list of reports : FlagReport repList("list"); repList.addReport(FlagReport("plot",agentName_p)); repList.addReport(FlagReport("plot",agentName_p));. More...

Public Member Functions inherited from casa::async::Thread
	Thread ()

virtual	~Thread ()

pthread_t	getId () const

pid_t	gettid () const

bool	isTerminationRequested () const

void *	join ()

void	startThread ()

Protected Member Functions
bool	computeInRowFlags (const vi::VisBuffer2 &visBuffer, VisMapper &visibilities, FlagMapper &flags, casacore::uInt row)
	Common functionality for each visBuffer (don't repeat at the row level) jagonzal: With the new WEIGHT/SIGMA convention it is not longer necessary divide the clipping range between the number of channels void preProcessBuffer(const vi::VisBuffer2 &visBuffer);. More...

bool	checkVisForClipOutside (casacore::Float visExpression)
	Specialization of the different clipping cases. More...

bool	checkVisForClipInside (casacore::Float visExpression)

bool	checkVisForClipOutsideAndZeros (casacore::Float visExpression)

bool	checkVisForClipInsideAndZeros (casacore::Float visExpression)

bool	checkVisForNaNs (casacore::Float visExpression)

bool	checkVisForNaNsAndZeros (casacore::Float visExpression)

void	setAgentParameters (casacore::Record config)
	Parse configuration parameters. More...

Protected Member Functions inherited from casa::FlagAgentBase
void	initialize ()

void	runCore ()
	Convenience function to be shared by parallel/non-parallel mode. More...

void	setDataSelection (casacore::Record config)

casacore::String	sanitizeCorrExpression (casacore::String corrExpression, std::vector< casacore::String > *corrProducts)
	Method to sanitize correlation expression and keep going. More...

void	generateAllIndex ()

void	generateRowsIndex (casacore::uInt nRows)

void	generateChannelIndex (casacore::uInt nChannels)

void	generatePolarizationIndex (casacore::uInt nPolarizations)

std::vector< casacore::uInt > *	generateAntennaPairRowsIndex (casacore::Int antenna1, casacore::Int antenna2)

void	indigen (std::vector< casacore::uInt > &index, casacore::uInt size)
	Generate index for all rows. More...

bool	find (const casacore::Vector< casacore::Int > &validRange, casacore::Int element)
	For checking ids. More...

bool	find (const casacore::Matrix< casacore::Double > &validRange, casacore::Double element)
	For checking ranges. More...

bool	find (const casacore::Matrix< casacore::Int > &validPairs, casacore::Int element1, casacore::Int element2)
	For checking pairs. More...

bool	find (const casacore::Block< int > &columns, int col)
	For checking columns. More...

bool	isNaN (casacore::Double number)
	Check if a given number is nan (for visibilities,gains and Tsys primarily) More...

bool	isNaN (casacore::Float number)

bool	isZero (casacore::Double number)

bool	isZero (casacore::Float number)

bool	isNaNOrZero (casacore::Float number)

bool	isNaNOrZero (casacore::Double number)

bool	checkIfProcessBuffer ()
	Check if buffer has to be processed. More...

virtual void	preProcessBuffer (const vi::VisBuffer2 &visBuffer)
	Common functionality for each visBuffer (don't repeat at the row level) More...

void	iterateRows ()
	Iterate trough list of rows. More...

void	iterateInRows ()
	Iterate trough visibilities mapper. More...

void	iterateAntennaPairs ()
	Iterate trough list of antenna pairs. More...

void	iterateAntennaPairsFlags ()
	Iterate trough list of antenna pairs w/o loading visibilities. More...

void	processAntennaPair (casacore::Int antenna1, casacore::Int antenna2)
	Methods to interactively iterate trough list of antenna pairs. More...

virtual void	iterateAntennaPairsInteractive (antennaPairMap *antennaPairMap_ptr)

virtual void	passIntermediate (const vi::VisBuffer2 &visBuffer)
	Iter-passes method. More...

virtual void	passFinal (const vi::VisBuffer2 &visBuffer)

void	setVisibilitiesMap (std::vector< casacore::uInt > rows, VisMapper visMap)
	Mapping functions (abs, real, imag, etc.) as requested by Urvashi. More...

void	setFlagsMap (std::vector< casacore::uInt > rows, FlagMapper flagMap)

casacore::Bool	checkVisExpression (polarizationMap *polMap)

virtual bool	computeRowFlags (const vi::VisBuffer2 &visBuffer, FlagMapper &flags, casacore::uInt row)
	Compute flags for a given visibilities point. More...

virtual bool	computeAntennaPairFlags (const vi::VisBuffer2 &visBuffer, VisMapper &visibilities, FlagMapper &flags, casacore::Int antenna1, casacore::Int antenna2, std::vector< casacore::uInt > &rows)
	Compute flags for a given (time,freq) antenna pair map. More...

virtual bool	computeAntennaPairFlags (const vi::VisBuffer2 &visBuffer, FlagMapper &flags, casacore::Int antenna1, casacore::Int antenna2, std::vector< casacore::uInt > &rows)
	Compute flags for a given (time,freq) antenna pair map w/o using visibilities. More...

Protected Member Functions inherited from casa::async::Thread
bool	isStarted () const

Private Attributes
casacore::Bool	clipminmax_p
	casacore::Input parameters /// More...

casacore::Bool	clipoutside_p

casacore::Bool	clipzeros_p

casacore::Bool	weightcol_p

casacore::Float	clipmin_p

casacore::Float	clipmax_p

casacore::Float	original_clipmin_p

casacore::Float	original_clipmax_p

bool(casa::FlagAgentClipping::*	checkVis_p )(casacore::Float)
	Specialization for the clipping case. More...

Additional Inherited Members
Public Types inherited from casa::FlagAgentBase
enum	datacolumn { DATA, CORRECTED, MODEL, RESIDUAL, RESIDUAL_DATA, FPARAM, CPARAM, PARAMERR, SNR, WEIGHT_SPECTRUM, FLOAT_DATA }

enum	iteration { ROWS, ROWS_PREPROCESS_BUFFER, IN_ROWS, IN_ROWS_PREPROCESS_BUFFER, ANTENNA_PAIRS, ANTENNA_PAIRS_FLAGS, ANTENNA_PAIRS_INTERACTIVE, ANTENNA_PAIRS_PREPROCESS_BUFFER }

Public Types inherited from casa::async::Thread
typedef void (	ThreadFunction )(void *)

Static Public Member Functions inherited from casa::FlagAgentBase
static FlagAgentBase *	create (FlagDataHandler *dh, casacore::Record config)

Public Attributes inherited from casa::FlagAgentBase
casacore::Bool	backgroundMode_p
	Externally visible configuration. More...

casacore::LogIO::Command	logLevel_p

casacore::Bool	apply_p

casacore::Bool	flag_p

Static Protected Member Functions inherited from casa::async::Thread
static void *	threadFunction (void *)

Protected Attributes inherited from casa::FlagAgentBase
FlagDataHandler *	flagDataHandler_p
	Common used members that must be accessible to derived classes. More...

std::unique_ptr< casacore::LogIO >	logger_p

casacore::String	agentName_p

casacore::String	summaryName_p

casacore::String	mode_p

casacore::uInt64	chunkFlags_p
	Flag counters. More...

casacore::uInt64	chunkNaNs_p

casacore::uInt64	tableFlags_p

casacore::uInt64	tableNaNs_p

casacore::uInt64	visBufferFlags_p

bool	flagRow_p

casacore::Bool	multiThreading_p
	Multithreading configuration and agent id. More...

casacore::Int	nThreads_p

casacore::Int	threadId_p

casacore::Bool	prepass_p
	Running configuration. More...

std::vector< casacore::uInt >	rowsIndex_p
	Lists of elements to process jagonzal (CAS-4312): We need channelIndex_p available for the Rflag agent, in order to take into account channel selection for the frequency mapping. More...

std::vector< casacore::uInt >	channelIndex_p

std::vector< casacore::uInt >	polarizationIndex_p

casacore::String	dataColumn_p
	Needed to be protected for timeavg in clip. More...

casacore::Bool	timeavg_p
	Pre-averaging parameters. More...

casacore::Double	timebin_p

casacore::Bool	channelavg_p

casacore::Vector< casacore::Int >	chanbin_p

Detailed Description

Definition at line 30 of file FlagAgentClipping.h.

Constructor & Destructor Documentation

casa::FlagAgentClipping::FlagAgentClipping	(	FlagDataHandler *	dh,
		casacore::Record	config,
		casacore::Bool	writePrivateFlagCube = `false`,
		casacore::Bool	flag = `true`
	)

casa::FlagAgentClipping::~FlagAgentClipping ( )

Member Function Documentation

bool casa::FlagAgentClipping::checkVisForClipInside ( casacore::Float visExpression )

protected

bool casa::FlagAgentClipping::checkVisForClipInsideAndZeros ( casacore::Float visExpression )

protected

bool casa::FlagAgentClipping::checkVisForClipOutside ( casacore::Float visExpression )

protected

Specialization of the different clipping cases.

bool casa::FlagAgentClipping::checkVisForClipOutsideAndZeros ( casacore::Float visExpression )

protected

bool casa::FlagAgentClipping::checkVisForNaNs ( casacore::Float visExpression )

protected

bool casa::FlagAgentClipping::checkVisForNaNsAndZeros ( casacore::Float visExpression )

protected

bool casa::FlagAgentClipping::computeInRowFlags	(	const vi::VisBuffer2 &	visBuffer,
		VisMapper &	visibilities,
		FlagMapper &	flags,
		casacore::uInt	row
	)

protectedvirtual

Common functionality for each visBuffer (don't repeat at the row level) jagonzal: With the new WEIGHT/SIGMA convention it is not longer necessary divide the clipping range between the number of channels void preProcessBuffer(const vi::VisBuffer2 &visBuffer);.

Compute flags afor a given mapped visibility point

Reimplemented from casa::FlagAgentBase.

void casa::FlagAgentClipping::setAgentParameters ( casacore::Record config )

protectedvirtual

Parse configuration parameters.

Reimplemented from casa::FlagAgentBase.

Member Data Documentation

bool(casa::FlagAgentClipping::* casa::FlagAgentClipping::checkVis_p)(casacore::Float)

private

Specialization for the clipping case.

Definition at line 71 of file FlagAgentClipping.h.

casacore::Float casa::FlagAgentClipping::clipmax_p

private

Definition at line 66 of file FlagAgentClipping.h.

casacore::Float casa::FlagAgentClipping::clipmin_p

private

Definition at line 65 of file FlagAgentClipping.h.

casacore::Bool casa::FlagAgentClipping::clipminmax_p

private

casacore::Input parameters ///

Definition at line 61 of file FlagAgentClipping.h.

casacore::Bool casa::FlagAgentClipping::clipoutside_p

private

Definition at line 62 of file FlagAgentClipping.h.

casacore::Bool casa::FlagAgentClipping::clipzeros_p

private

Definition at line 63 of file FlagAgentClipping.h.

casacore::Float casa::FlagAgentClipping::original_clipmax_p

private

Definition at line 68 of file FlagAgentClipping.h.

casacore::Float casa::FlagAgentClipping::original_clipmin_p

private

Definition at line 67 of file FlagAgentClipping.h.

casacore::Bool casa::FlagAgentClipping::weightcol_p

private

Definition at line 64 of file FlagAgentClipping.h.

The documentation for this class was generated from the following file:

casa/code/flagging/Flagging/FlagAgentClipping.h

Public Member Functions

Protected Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation