Class to combine multiple files in a single HDF5 file. More...

#include <MultiHDF5.h>

Inheritance diagram for casacore::MultiHDF5:

Public Member Functions
	MultiHDF5 (const String &name, ByteIO::OpenOption, Int blockSize=0)
	Open or create a MultiHDF5 with the given name. More...

virtual	~MultiHDF5 ()
	The destructor flushes and closes the file. More...

virtual void	reopenRW ()
	Reopen the underlying file for read/write access. More...

virtual void	fsync ()
	Fsync the file (i.e., force the data to be physically written). More...

Public Member Functions inherited from casacore::MultiFileBase
	MultiFileBase (const String &name, Int blockSize, Bool useODirect)
	Open or create a MultiFileBase with the given name. More...

virtual	~MultiFileBase ()
	The destructor flushes and closes the file. More...

Int	fileId (const String &name, Bool throwExcp=True) const
	Return the file id of a file in the MultiFileBase object. More...

Int	addFile (const String &name)
	Add a file to the MultiFileBase object. More...

void	deleteFile (Int fileId)
	Delete a file. More...

Int64	read (Int fileId, void *buffer, Int64 size, Int64 offset)
	Read a block at the given offset. More...

Int64	write (Int fileId, const void *buffer, Int64 size, Int64 offset)
	Write a block at the given offset. More...

void	flush ()
	Flush the file by writing all dirty data and all header info. More...

void	resync ()
	Resync with another process by clearing the buffers and rereading the header. More...

String	fileName () const
	Get the file name of the MultiFileBase. More...

Bool	isWritable () const
	Is the file writable? More...

Bool	useODirect () const
	Will O_DIRECT be used? More...

Int64	blockSize () const
	Get the block size used. More...

uInt	nfile () const
	Get the nr of virtual files. More...

Int64	size () const
	Get the total nr of data blocks used. More...

const vector< MultiFileInfo > &	info () const
	Get the info object (for test purposes mainly). More...

const vector< Int64 > &	freeBlocks () const
	Get the free blocks (for test purposes mainly). More...

Private Member Functions
virtual void	doAddFile (MultiFileInfo &)
	Do the class-specific actions on adding a file. More...

virtual void	doDeleteFile (MultiFileInfo &)
	Do the class-specific actions on deleting a file. More...

virtual void	flushFile ()
	Flush the file itself. More...

virtual void	close ()
	Flush and close the file. More...

virtual void	writeHeader ()
	Write the header info. More...

virtual void	readHeader (Bool always=True)
	Read the header info. More...

virtual void	extend (MultiFileInfo &info, Int64 lastblk)
	Extend the virtual file to fit lastblk. More...

virtual void	readBlock (MultiFileInfo &info, Int64 blknr, void *buffer)
	Read a data block. More...

virtual void	writeBlock (MultiFileInfo &info, Int64 blknr, const void *buffer)
	Write a data block. More...

Private Attributes
HDF5File	itsFile

Additional Inherited Members
Protected Member Functions inherited from casacore::MultiFileBase
void	setNewFile ()
	Set the flags and blockSize for a new MultiFile/HDF5. More...

Protected Attributes inherited from casacore::MultiFileBase
String	itsName

Int64	itsBlockSize

Int64	itsNrBlock

Int64	itsHdrCounter

vector< MultiFileInfo >	itsInfo

std::shared_ptr< MultiFileBuffer >	itsBuffer

Bool	itsUseODirect

Bool	itsWritable

Bool	itsChanged

vector< Int64 >	itsFreeBlocks

Detailed Description

Class to combine multiple files in a single HDF5 file.

Intended use:

Public interface

Review Status

Test programs:: tMultiHDF5

Synopsis

This class is a container file holding multiple virtual files. It is primarily meant as a container file for the storage manager files of a table to reduce the number of files used (especially for Lustre) and to reduce the number of open files (especially when concatenating tables).
A secondary goal is offering the ability to use an IO buffer size that matches the file system well (large buffer size for e.g. ZFS).

The SetupNewTable constructor has a StorageOption argument to define if a MultiFile has to be used and if so, the buffer size to use. It is also possible to specify that through aipsrc variables.

A virtual file is spread over multiple (fixed size) data blocks in the MultiFile. A data block is never shared by multiple files. For each virtual file MultiFile keeps a MultiFileInfo object telling the file size and the blocks numbers used for the file. When flushing the MultiFile, this meta info is written into a header block and, if needed, continuation blocks. On open and resync, it is read back.

A virtual file is represented by an MFFileIO object, which is derived from ByteIO and as such part of the casacore IO framework. It makes it possible for applications to access a virtual file in the same way as a regular file.

It is possible to delete a virtual file. Its blocks will be added to the free block list (which is also stored in the meta info).

Example

In principle it is possible to use the MultiFile functions directly. However, in general it is much easier to use an MFFileIO object per virtual file as shown below.

// Create a new MultiFile using a block size of 1 MB.
MultiFile mfile("file.mf', ByteIO::New, 1048576);
// Create a virtual file in it.
MFFileIO mf1(mfile, "mf1", ByteIO::New);
// Use it (for example) as the sink of AipsIO.
AipsIO stream (&mf1);
// Write values.
stream << (Int)10;
stream << True;
// Seek to beginning of file and read data in.
stream.setpos (0);
Int vali;
Bool valb;
stream >> vali >> valb;

To Do

write headers at alternating file positions (for robustness)
possibly write headers entirely at the end if larger than blocksize

Definition at line 105 of file MultiHDF5.h.

Constructor & Destructor Documentation

casacore::MultiHDF5::MultiHDF5	(	const String &	name,
		ByteIO::OpenOption	,
		Int	blockSize = `0`
	)

Open or create a MultiHDF5 with the given name.

Upon creation the block size can be given. If 0, it uses the block size of the file system the file is on.

virtual casacore::MultiHDF5::~MultiHDF5 ( )

virtual

The destructor flushes and closes the file.

Member Function Documentation

virtual void casacore::MultiHDF5::close ( )

privatevirtual

Flush and close the file.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::doAddFile ( MultiFileInfo & )

privatevirtual

Do the class-specific actions on adding a file.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::doDeleteFile ( MultiFileInfo & )

privatevirtual

Do the class-specific actions on deleting a file.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::extend	(	MultiFileInfo &	info,
		Int64	lastblk
	)

privatevirtual

Extend the virtual file to fit lastblk.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::flushFile ( )

privatevirtual

Flush the file itself.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::fsync ( )

virtual

Fsync the file (i.e., force the data to be physically written).

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::readBlock	(	MultiFileInfo &	info,
		Int64	blknr,
		void *	buffer
	)

privatevirtual

Read a data block.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::readHeader ( Bool always = True )

privatevirtual

Read the header info.

If always==False, the info is only read if the header counter has changed.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::reopenRW ( )

virtual

Reopen the underlying file for read/write access.

Nothing will be done if the file is writable already. Otherwise it will be reopened and an exception will be thrown if it is not possible to reopen it for read/write access.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::writeBlock	(	MultiFileInfo &	info,
		Int64	blknr,
		const void *	buffer
	)

privatevirtual

Write a data block.

Implements casacore::MultiFileBase.

virtual void casacore::MultiHDF5::writeHeader ( )

privatevirtual

Write the header info.

Implements casacore::MultiFileBase.

Member Data Documentation

HDF5File casacore::MultiHDF5::itsFile

private

Definition at line 149 of file MultiHDF5.h.

The documentation for this class was generated from the following file:

casa/casacore/casa/IO/MultiHDF5.h

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Intended use:

Review Status

Synopsis

Example

To Do

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation