BinaryTable is used to translate a FITS binary table to a Casacore Table. More...

#include <BinTable.h>

Inheritance diagram for casacore::BinaryTable:

Public Member Functions
	BinaryTable (FitsInput &, FITSErrorHandler errhandler=FITSError::defaultHandler, Bool useMiriadSM=False, Bool sdfits=False)
	The only constructor is from a FitsInput, you can also optionally provide a FITS error handler. More...

	~BinaryTable ()

Table	fullTable (const String &tabName, const Table::TableOption=Table::NewNoReplace, Bool useMiriadSM=False)
	Get the full table, using the supplied arguments to construct the table. More...

Table	fullTable ()
	This version of the fullTable return a Memory based table Its recommended if its being used as a temporary. More...

const TableDesc &	getDescriptor ()
	Get an appropriate TableDesc (this is the same TableDesc used to construct any Table objects returned by this class. More...

TableRecord &	getKeywords ()
	Return the Table keywords (this is the same TableRecord used in any Table objects returned by this class. More...

const Table &	thisRow ()
	Get a Table with a single row, the current row of the FITS table. More...

const Table &	nextRow ()
	Get a Table with a single row, the next row of the FITS table. More...

Public Member Functions inherited from casacore::BinaryTableExtension
	BinaryTableExtension (FitsInput &, FITSErrorHandler errhandler=FITSError::defaultHandler)

	BinaryTableExtension (FitsKeywordList &, FITSErrorHandler errhandler=FITSError::defaultHandler)

	BinaryTableExtension (FITSErrorHandler errhandler=FITSError::defaultHandler)
	constructor to match write_bintbl_hdr() More...

virtual	~BinaryTableExtension ()

Int	nrows () const
	return basic elements of a table More...

Int	ncols () const

uInt	rowsize () const

Int	tfields () const

const char *	tform (int n) const

double	tscal (int n) const

double	tzero (int n) const

Bool	isatnull (int n) const

Int	tnull (int n) const

const char *	ttype (int n) const

const char *	tunit (int n) const

const char *	tdisp (int n) const

const char *	tdim (int n) const

const char *	ctype (int n) const

double	crpix (int n) const

double	crota (int n) const

double	crval (int n) const

double	cdelt (int n) const

Int	theap () const

const char *	author () const

const char *	referenc () const

int	bind (int, FitsBase &)
	binds a FitsField to a column More...

BinaryTableExtension &	operator++ ()
	row selector functions More...

BinaryTableExtension &	operator-- ()

BinaryTableExtension &	operator() (int)

int	read ()
	read entire table into memory More...

int	read (int)
	read next N rows into memory More...

int	set_next (int)
	prepare to write the next N rows More...

int	write (FitsOutput &)
	write current rows More...

int	write_binTbl_hdr (FitsOutput &, long, int, const char , const char , const char *, const char , long)
	create a binary table header without using FitsKeywordList objet. More...

FitsBase &	field (int i) const
	select a field More...

Int	currrow () const
	get current row More...

Public Member Functions inherited from casacore::ExtensionHeaderDataUnit
	ExtensionHeaderDataUnit (FitsInput &, FITSErrorHandler errhandler=FITSError::defaultHandler)

	ExtensionHeaderDataUnit (FitsKeywordList &, FITSErrorHandler errhandler=FITSError::defaultHandler)

	~ExtensionHeaderDataUnit ()

char *	xtension ()

char *	extname ()

Int	extver ()

Int	extlevel ()

Int	pcount ()

Int	gcount ()

int	read (char *addr, int nbytes)
	read next N bytes into addr More...

int	write (FitsOutput &fout, char *addr, int nbytes)
	write next N bytes from addr to the FITS output fout More...

Public Member Functions inherited from casacore::HeaderDataUnit
virtual	~HeaderDataUnit ()

Int	dims () const

Int	dim (int n) const

OFF_T	fitsdatasize () const

FITS::ValueType	datatype () const

Int	fitsitemsize () const

Int	localitemsize () const

FITS::HDUType	hdutype () const

int	err () const

int	skip (uInt n)
	skipping one or more HDU's More...

int	skip ()

int	write_hdr (FitsOutput &)
	write the current header More...

ConstFitsKeywordList &	kwlist ()
	Operations on the HDU's keyword list. More...

Vector< String >	kwlist_str (Bool length80=False)
	return the header of the chdu as a vector of String. More...

void	firstkw ()

void	lastkw ()

const FitsKeyword *	nextkw ()

const FitsKeyword *	prevkw ()

const FitsKeyword *	currkw ()

const FitsKeyword *	kw (int n)

const FitsKeyword *	kw (const FITS::ReservedName &n)

const FitsKeyword *	nextkw (FITS::ReservedName &n)

const FitsKeyword *	kw (FITS::ReservedName &n, int i)

const FitsKeyword *	nextkw (FITS::ReservedName &n, int i)

const FitsKeyword *	kw (const char *n)

const FitsKeyword *	nextkw (const char *n)

void	mk (FITS::ReservedName k, Bool v, const char *c=0)

void	mk (FITS::ReservedName k, const char v=0, const char c=0)

void	mk (FITS::ReservedName k, Int v, const char *c=0)

void	mk (FITS::ReservedName k, double v, const char *c=0)

void	mk (int n, FITS::ReservedName k, Bool v, const char *c=0)

void	mk (int n, FITS::ReservedName k, const char v, const char c=0)

void	mk (int n, FITS::ReservedName k, Int v, const char *c=0)

void	mk (int n, FITS::ReservedName k, double v, const char *c=0)

void	mk (const char n, Bool v, const char c=0)

void	mk (const char n, const char v=0, const char *c=0)

void	mk (const char n, Int v, const char c=0)

void	mk (const char n, float v, const char c=0)

void	mk (const char n, double v, const char c=0)

void	mk (const char n, Int r, Int i, const char c=0)

void	mk (const char n, float r, float i, const char c=0)

void	mk (const char n, double r, double i, const char c=0)

void	spaces (const char n=0, const char c=0)

void	comment (const char n=0, const char c=0)

void	history (const char *c=0)

Bool	notnull (double x) const

Bool	notnull (char *s) const

Bool	notnull (Int l) const

int	get_hdr (FITS::HDUType, FitsKeywordList &)

int	read_data (char *, Int)

int	write_data (FitsOutput &, char *, Int)

OFF_T	read_all_data (char *)

int	write_all_data (FitsOutput &, char *)

Private Member Functions
void	fillRow ()
	this is the function that fills each row in as needed More...

Private Attributes
Table *	currRowTab
	This is the Scratch table containing the current row. More...

Int *	nelem
	The number of elements for each column of the BinaryTableExtension. More...

std::map< Int, String > *	colNames
	This is a map from column number to column name. More...

TableRecord	kwSet

FITS::ValueType *	vatypes_p
	These are used by any VADesc columns. More...

void **	vaptr_p

VADescFitsField *	va_p

char *	theheap_p

Additional Inherited Members
Public Types inherited from casacore::HeaderDataUnit
enum	HDUErrs { OK, NOMEM, MISSKEY, BADBITPIX, NOAXISN, NOPCOUNT, NOGCOUNT, BADPCOUNT, BADGCOUNT, NOGROUPS, BADNAXIS, BADREC, BADTYPE, BADRULES, BADSIZE, BADOPER, BADCONV, BADIO }
	error handling and error codes that can be returned More...

Static Public Member Functions inherited from casacore::HeaderDataUnit
static Bool	determine_type (FitsKeywordList &, FITS::HDUType &, FITS::ValueType &, FITSErrorHandler, HDUErrs &)
	Determines the HDU type and the data type Parameterss: keyword list, hdu type, data type, error handler and error status. More...

static Bool	compute_size (FitsKeywordList &, OFF_T &, Int &, FITS::HDUType &, FITS::ValueType &, FITSErrorHandler, HDUErrs &)
	Compute the total size of the data associated with an HDU. More...

Protected Member Functions inherited from casacore::BinaryTableExtension
	BinaryTableExtension (FitsInput &, FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler)
	sets field addresses in the current row void set_fitsrow(Int); More...

	BinaryTableExtension (FitsKeywordList &, FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler)

	BinaryTableExtension (FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler)

virtual int	readrow ()
	read and write the next FITS data row More...

virtual int	writerow (FitsOutput &)

void	set_fitsrow (Int)
	sets field addresses in the current row More...

Protected Member Functions inherited from casacore::ExtensionHeaderDataUnit
	ExtensionHeaderDataUnit (FitsInput &, FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler)

	ExtensionHeaderDataUnit (FitsKeywordList &, FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler)

	ExtensionHeaderDataUnit (FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler)
	This constructor is used for writing only required keywords. More...

Protected Member Functions inherited from casacore::HeaderDataUnit
	HeaderDataUnit (FitsInput &, FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler)
	For input – ~ should delete the keyword list: kwflag = 1. More...

	HeaderDataUnit (FitsKeywordList &, FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler, FitsInput *=0)
	For output – ~ should not delete keyword list: kwflag = 0 07/21/98 AKH Clarification: HeaderDataUnit has a copy of the FitsKeywordList, and should delete it. More...

	HeaderDataUnit (FITS::HDUType, FITSErrorHandler errhandler=FITSError::defaultHandler, FitsInput *=0)
	constructor for objects that write only required keyword to fits file. More...

bool	init_data_unit (FITS::HDUType t)
	for write required keywords only to use. More...

void	posEnd ()

void	errmsg (HDUErrs, const char *)

char *	assign (FITS::ReservedName)

char *	assign (FITS::ReservedName, int)

double	asgdbl (FITS::ReservedName, double)

double	asgdbl (FITS::ReservedName, int, double)

Protected Attributes inherited from casacore::BinaryTableExtension
Int	tfields_x

char **	tform_x

double *	tscal_x

double *	tzero_x

Bool *	isatnull_x

Int *	tnull_x

char **	ttype_x

char **	tunit_x

char **	tdisp_x

char **	tdim_x

char **	ctype_x

double *	crpix_x

double *	crota_x

double *	crval_x

double *	cdelt_x

Int	nAxis

Int	theap_x

char *	author_x

char *	referenc_x

unsigned char *	fitsrow

uInt *	fits_offset

uInt	fitsrowsize

Bool	isoptimum

unsigned char *	table

uInt	tablerowsize

uInt	alloc_row

Int	beg_row

Int	end_row

Int	curr_row

FitsBase **	fld

uInt *	table_offset

void **	data_addr
	data addresses of fields of current row More...

Protected Attributes inherited from casacore::ExtensionHeaderDataUnit
char *	xtension_x

char *	extname_x

Int	extver_x

Int	extlevel_x

Int	pcount_x

Int	gcount_x

Protected Attributes inherited from casacore::HeaderDataUnit
FitsKeywordList &	kwlist_

ConstFitsKeywordList	constkwlist_

FitsInput *	fin

FITSErrorHandler	errfn

HDUErrs	err_status

Int	no_dims

Int *	dimn

OFF_T	fits_data_size
	uInt fits_data_size; // size in bytes of total amount of data More...

FITS::ValueType	data_type

Int	fits_item_size

Int	local_item_size

FITS::HDUType	hdu_type

char	pad_char

double	double_null

char	char_null

Int	Int_null

Detailed Description

BinaryTable is used to translate a FITS binary table to a Casacore Table.

Intended use:

Public interface

Review Status

Test programs:: tBinTable

Prerequisite

Etymology

BinaryTable inherits from the FITS BinaryTableExtension class and its primary use is to convert that class to a Casacore Table. This explains it's use but not its name. A better name should be found.

Synopsis

The class starts with an already existing FitsInput object, which should be set at a BinaryTableExtension HDU. Member functions provide a TableDesc appropriate for the FITS data (to help in constructing a Casacore Table compatible with the BinaryTableExtension), a Table containing the current row of FITS data and a Table containing the next row of FITS data (which can be used to step through the FitsInput, copying each row using the RowCopier class), and a Table containin the entire FITS binary table from the current row to the end of the table.

Motivation

We need a way to get FITS data into Casacore Tables.

Example

open a FitsInput from a disk file, if the HDU is a BinaryTableExtension, then instantiate a BinTable object and get the entire table. A fair amount of error checking has been eliminated from this example.

FitsInput infits("myFITSFile", FITS::Disk);
switch (infits.hdutype()) {
case FITS::BinaryTableHDU:
BinaryTable bintab(infits);
Table tab = bintable.fullTable("myTable");
break;
}

There would obviously be other cases to the switch to deal with any other HDUs (e.g. skip them via infits.skip_hdu()). The Table destructor would write "myTable" to disk.

To Do

It would be nice to construct this directly from the BinaryTableExtension.
When random access FITS becomes available, this needs to be able to deal with that.
A corresponding class is needed for conversion from Casacore Tables to FITS.
Throw exceptions rather than send messages to cout : however the entire FITS module behaves this way, so it should all remain consistent.
The following types of columns are not dealt with very well or at all (Bit, Byte, 0-length columns).
No attempt use any TDIM columns or keywords to shape arrays.

Definition at line 110 of file BinTable.h.

Constructor & Destructor Documentation

casacore::BinaryTable::BinaryTable	(	FitsInput &	,
		FITSErrorHandler	errhandler = `FITSError::defaultHandler`,
		Bool	useMiriadSM = `False`,
		Bool	sdfits = `False`
	)

The only constructor is from a FitsInput, you can also optionally provide a FITS error handler.

If useMiriadSM is True, use the Miriad storage manager for all columns, otherwise AipsIO. If sdfits is True, all non-reserved and some reserved keyword are treated as if they were columns with constant values "virtual columns" in the sdfits convention.

casacore::BinaryTable::~BinaryTable ( )

Member Function Documentation

void casacore::BinaryTable::fillRow ( )

private

this is the function that fills each row in as needed

Table casacore::BinaryTable::fullTable	(	const String &	tabName,
		const Table::TableOption	= `Table::NewNoReplace`,
		Bool	useMiriadSM = `False`
	)

Get the full table, using the supplied arguments to construct the table.

The table will contain all data from the current row to the end of the BinarTableExtension.If useMiriadSM is True, use the Miriad storage manager for all columns, otherwise AipsIO.

Table casacore::BinaryTable::fullTable ( )

This version of the fullTable return a Memory based table Its recommended if its being used as a temporary.

const TableDesc& casacore::BinaryTable::getDescriptor ( )

Get an appropriate TableDesc (this is the same TableDesc used to construct any Table objects returned by this class.

TableRecord& casacore::BinaryTable::getKeywords ( )

Return the Table keywords (this is the same TableRecord used in any Table objects returned by this class.

const Table& casacore::BinaryTable::nextRow ( )

Get a Table with a single row, the next row of the FITS table.

The returned Table is a Scratch table. The FITS input is positioned to the next row and the values translated and returned in a Table object.

const Table& casacore::BinaryTable::thisRow ( )

Get a Table with a single row, the current row of the FITS table.

The returned Table is a Scratch table. The standard BinaryTableExtension manipulation functions are available to position the FITS input at the desired location.

Member Data Documentation

std::map<Int, String>* casacore::BinaryTable::colNames

private

This is a map from column number to column name.

Definition at line 168 of file BinTable.h.

Table* casacore::BinaryTable::currRowTab

private

This is the Scratch table containing the current row.

Definition at line 164 of file BinTable.h.

TableRecord casacore::BinaryTable::kwSet

private

Definition at line 170 of file BinTable.h.

Int* casacore::BinaryTable::nelem

private

The number of elements for each column of the BinaryTableExtension.

Definition at line 166 of file BinTable.h.

char* casacore::BinaryTable::theheap_p

private

Definition at line 176 of file BinTable.h.

VADescFitsField* casacore::BinaryTable::va_p

private

Definition at line 175 of file BinTable.h.

void** casacore::BinaryTable::vaptr_p

private

Definition at line 174 of file BinTable.h.

FITS::ValueType* casacore::BinaryTable::vatypes_p

private

These are used by any VADesc columns.

Definition at line 173 of file BinTable.h.

The documentation for this class was generated from the following file:

casa/casacore/fits/FITS/BinTable.h

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Intended use:

Review Status

Prerequisite

Etymology

Synopsis

Motivation

Example

To Do

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation